Query= MSMg01no233_g03.b1 MSMg01no233_g03.b1 CHROMAT_FILE:
MSMg01no233_g03.b1 PHD_FILE: MSMg01no233_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:04 2005
(698 letters)
>mm_chr4_69499196_69500287
Length = 1092
Score = 1237 bits (640), Expect = 0.0
Identities = 679/698 (97%), Gaps = 12/698 (1%)
Strand = Plus / Minus
Query: 4 ggaattcattccttttattttacattactccgagaagctggaacttcatgtcctagaact 63
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 743 ggaattcattccttttattttacat---tccgagaagctggaacttcatgtcctagaact 687
Query: 64 tggcctgagtgcctaactgggaacagagaacaaaggctatgaccatctaagccttcttct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tggcctgagtgcctaactgggaacagagaacaaaggctatgaccatctaagccttcttct 627
Query: 124 ccagctcacttcctaggggctttcatgtgccttagagaagattaggtttgttctattgaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccagctcacttcctaggggctttcatgtgccttagagaagattaggtttgttctattgaa 567
Query: 184 actgtccttaaggctaaaagaagggagtttctgtccaacttggactacacagggaggcct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 actgtccttaaggctaaaagaagggagtttctgtccaacttggactacacagggaggcct 507
Query: 244 tgccacaaagaaaaacaaacaagcctgagtcttttatgcaagccgactcaccagagagga 303
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 506 tgccacaaagaaaaacaaacaagcctgagtcttttatgctagccgactcaccagagagga 447
Query: 304 aggctgtgatacatgtaggataggaaaaggattttgctggcaggaggaatttgtttatag 363
||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 446 aggctgtgatacatgtagg------acaggattttgctggcaggaggaatttgtttatag 393
Query: 364 ttatgtttc---tgattattattatcattaataataatgggtattatttgtatttatcac 420
||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 392 ttatgtttccgattattattattatcattaataataatggttattatttgtatttatcac 333
Query: 421 tcaaagcagtggctttccttatgacattttcacatatatgtactttactcaaatatgcca 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 332 tcaaagcagtggctttccttatgacattttcacatatatgtactttgctcaaatatgcca 273
Query: 481 tttctcccctctcttcctgttgtccttctttccatccctgtcatgaaaacgttaatcctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tttctcccctctcttcctgttgtccttctttccatccctgtcatgaaaacgttaatcctt 213
Query: 541 attgttacttaccatttttctagttggttgatctggggcaaattgctttacctctgcaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 attgttacttaccatttttctagttggttgatctggggcaaattgctttacctctgcaaa 153
Query: 601 ttcattttcttgtctttcaatgaggcaaatgcctgtgtcacagaattgttatgaggatat 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 152 ttcattttcttgtctttcaatgaggcaaatgcctgtgtcacagaattcttatgaggatat 93
Query: 661 taaaaataataatcgtagtcatagtgacaaatgtttgc 698
||||||||||||| ||||||||||||||||||||||||
Sbjct: 92 taaaaataataattgtagtcatagtgacaaatgtttgc 55
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1092
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1082
Effective search space: 744416
Effective search space used: 744416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_g03.g1 MSMg01no233_g03.g1 CHROMAT_FILE:
MSMg01no233_g03.g1 PHD_FILE: MSMg01no233_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:04 2005
(654 letters)
>mm_chr4_69436943_69437995
Length = 1053
Score = 1218 bits (630), Expect = 0.0
Identities = 648/654 (99%), Gaps = 1/654 (0%)
Strand = Plus / Plus
Query: 1 cagaggtctggcagtttagaaatagaatcctttggtaaattccttacacacttactccaa 60
|||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 201 cagaggtctggcagcttagaaatagaatcctttggtaaattccttagaaacttactccaa 260
Query: 61 aaacacctatatttcttacacacacacttgaataatccaggcctagagaaacaagtcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacacctatatttcttacacacacacttgaataatccaggcctagagaaacaagtcctt 320
Query: 121 tactcccttgacctgtgaggttttcttttctctgtaagaatacaatttcacctgtaagga 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactcccttgacctgtggggttttcttttctctgtaagaatacaatttcacctgtaagga 380
Query: 181 cttaatattaaaataagcaaatgtatatcatgtgttttgaattacacatagtgggacata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttaatattaaaataagcaaatgtatatcatgtgttttgaattacacatagtgggacata 440
Query: 241 aatcagtgttgatctacatccctaacatgcatcttggagaccaggtctcaatgtgattcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatcagtgttgatctacatccctaacatgcatcttggagaccaggtctcaatgtgattcc 500
Query: 301 ataaattaatccacattgacagagcattagctctgtgtgttaagtgccaaaaaaatgatc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 ataaattaatccacattgacagagcattagctctgtgtgttaagtgccaaaaaa-tgatc 559
Query: 361 aaataaatgactggaagggtgtgcagtctgagaaagcttacaacctgtaacgaaatctcc 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 560 aaataaatgactggaagggtgtgcagtctgagaaagcttacagcctgtaacgaaatctcc 619
Query: 421 aattccaataaaggcagcaaaggaaaattaatattaactgagtgaatctatcaccctgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aattccaataaaggcagcaaaggaaaattaatattaactgagtgaatctatcaccctgct 679
Query: 481 tctgagaagagatacggctttctcaaaactattcagcaacaaaacaaaatacctagacag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tctgagaagagatacggctttctcaaaactattcagcaacaaaacaaaatacctagacag 739
Query: 541 acaccttttgatattagatgactccacccttccctccatgaggtgtgtcttggaaggatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acaccttttgatattagatgactccacccttccctccatgaggtgtgtcttggaaggatt 799
Query: 601 aagtgaaacagggaggtagaccactagtaagatctttgcatttatcttgtattg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aagtgaaacagggaggtagaccactagtaagatctttgcatttatcttgtattg 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space: 671692
Effective search space used: 671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
