BAC Information

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BAC

Clone NameMSMg01-233H02
Chromosome4 (Build37)
Map Location 6,716,226 - 6,716,508
singlet/doubletsinglet
Overlap geneTox
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneLOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233H02.T7 (MSMg01no233_h02.b1)MSMg01-233H02.TJ (MSMg01no233_h02.g1)
ACCAG399646AG399647
length961728
length of high quality
(start - end)
91 (102 - 192)283 (80 - 362)
definitionCHROMAT_FILE: MSMg01no233_h02.b1 PHD_FILE: MSMg01no233_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:09 2005CHROMAT_FILE: MSMg01no233_h02.g1 PHD_FILE: MSMg01no233_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTACAATCACTCCTATTCTCTCCTCTCCCCCCCTTCCCCCCCCCCCANA
AAAACTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATT
TGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGCCTCTTTGTCTTACTGACGATGTCTTTTGTCTTGTAGAAACTTTGGAG
TTTCATTAGGTTCTATTCGTTAATTCTCGATCTCTACTCCACAAGCCATT
GCTCGTTCTGTTCATGAACTTTTCCCCTGTGTTCTTACCTTCGACGGACT
TTCCCCACCTTTCTCAACTATATTTTTTTTCCGCCCTCCCCCCCCCCACG
TGACCTTTATCCTGACCTCAGTTCCCCATTTTGACGCTTTCCCCCCCCGG
CACACAAAAAATTGTTTTTATACCTCGCGATTTCTCTCTTCCTATGTACC
GCACCTTCCCACTTATGTTCCATTTTTAATTCTCTCCTCCCCCCAATATT
TGCCTACGTCCGCTCGCTATTCTCAAAGGGCCCCCCGCTCTAACCTATTC
TTTTATACTCCCGCCCCACTCCATTTCCTCCCGCCGTATTTTTTATGTTG
CCCCGCCGCGAGATCCGTTCTTTTTCGATACCTATATCTCGCATATTTAA
TTCTAAAAACCACACACCAACCCTGAGCTACCTTATCCTCTAACACAAAT
TCGCAATACTTTCTGCACAGTCGTATTTGCTCTGGCCACAGAGCTACCTT
GTGTGTTACGTATATTTTTTTACCCCTCTCTCTCCCCTTCTCGCCTTTTG
TTTTATCCACCTACTATTTCTTTCTTTTTATAACCCTCCTCCCACTCAAA
CTCTCCATCCA
ATACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAGAAAGGGGCAAATGGG
GATATTATTGATCATTGTAAATGGAACGAATTTATATAGAGTAATTCCTC
ATATAGAATAATAATGAAAGGACCATCTTCTGAAATGCCAGCTTTGAGTC
AACTTTCGAATCCAACTGGGTTTTGAACCACATTCATTGAAACATCCACG
TAGATAAACTAGTTTGTGATTTCAGGCAGTAACATTGTTACTGAGACAGA
GCAGAGATGTTCCTCATACAGCTTCCTGGCTTTGCTTGGTGAAGGGTGTT
AGCTATTCTTAGCTTAATTAAAATACGATCACCCAAGGTTGCTTCCTTCA
GAACTTAACAACTAACCCAGCTTCACCAAAGGGTGAAGTTCTCATTGAGG
ACTCTGCCTCAGTTATGTATATGATCCAGACATGATGATGCTCTGCTTAA
AAGGTCTCAAAATACTTAGTAAAAATAGAGAAATGTTAACTTGACCAACA
ACAACAAATAAGAAAAAGACTGGTTCTAATACCTAGATTCTGATAAGAAC
TGAAAATGAAGGTATTTTCCTGCTTTGGTAATTGGTGTTCTTCCTAAAAT
GATGGTCTAGCGGGGCTGACTCTCACTGGTGAAAGAACTTGGACTCTTCA
TTTACCAGATAGTGCAAAGCAAAGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_h02.g1 MSMg01no233_h02.g1 CHROMAT_FILE:
MSMg01no233_h02.g1 PHD_FILE: MSMg01no233_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:09 2005
         (283 letters)



>mm_chr4_6716026_6716708
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagagaaaggggcaaatggggatattattgatcattgtaaatggaacgaatttatatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 caagagaaaggggcaaatggggatattattgatcattgtaaatggaacgaatttatatag 424

                                                                       
Query: 61  agtaattcctcatatagaataataatgaaaggaccatcttctgaaatgccagctttgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 423 agtaattcctcatatagaataataatgaaaggaccatcttctgaaatgccagcttggagt 364

                                                                       
Query: 121 caactttcgaatccaactgggttttgaaccacattcattgaaacatccacgtagataaac 180
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 363 caactttcgaatccaactgggttttgaaccacattctttgaaacatccaggtagataaac 304

                                                                       
Query: 181 tagtttgtgatttcaggcagtaacattgttactgagacagagcagagatgttcctcatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tagtttgtgatttcaggcagtaacattgttactgagacagagcagagatgttcctcatac 244

                                                      
Query: 241 agcttcctggctttgcttggtgaagggtgttagctattcttag 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agcttcctggctttgcttggtgaagggtgttagctattcttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)