BAC Information

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BAC

Clone NameMSMg01-233K18
Chromosome4 (Build37)
Map Location 17,666,324 - 17,666,514
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233K18.T7 (MSMg01no233_k18.b1)MSMg01-233K18.TJ (MSMg01no233_k18.g1)
ACCAG399801AG399802
length742742
length of high quality
(start - end)
701 (40 - 740)199 (453 - 651)
definitionCHROMAT_FILE: MSMg01no233_k18.b1 PHD_FILE: MSMg01no233_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:25 2005CHROMAT_FILE: MSMg01no233_k18.g1 PHD_FILE: MSMg01no233_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TAGACCTGATAAGCAGCTTCAATGCAGTTGCTGAATATAAAATTAACTCA
AACAAATCAGTGGCATTTCTCTACACAAAGGACAAACAGGCTGAGAAAGA
AATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATACC
TTGGTGTGACTCTAACTAAGGAAGTCAAAGTGCAGTATGATAAGAACTTC
AAGTCTTTGAAGAAAGAAATCAAATTAGTTCACAGAAGATGGAAAGATCT
CCCATGCTAATGGATTGGCAGGATTAATATAGTAAACATGACTATCTTGC
TGAAAGAAATCTACAGAGTCATCAAAATTCCACTCAATACTTAGAGTAAA
AAGGGTAATTTGCATAGGCAGCTGGCGCCTAAAAGATGGCGCCAGTCTCT
GGTACACCATCTCCATAAACAACATCACTGAGCAGGTGCTAGCCCGTATC
TGGCGCCAACCCCTCCTGAGCAGGTGCTTGCTAATTAAAGTACCAGCAGA
CTGACCAATCCCAGGAGGACACATAGCCCTCCCCAGTACTGGGGTGTATA
TAAGTAGTCCTCCCTGGGTTCCCGGGGTTCCCGTAGCATCGAGGAGTTCC
TGGAGTAAAGCTGTTGAGAAGAATCTGACCGTGTTGCATTTTTCCTTACC
GGACAAGGTGAGCGCAACAAATTTGCAAATTCATCTGGATAA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCCGAAATACAATGATGAGCAAATATAAATATGAATAGTTA
GGATCTCAAATAGTTTTACCCAACTAAAAGGAAAAAGAAACTTTGGAAAA
GGAAATATAATTTCCATGTTTTCTGATGTAGAAGAGTATTAGTCTCAGCA
ATTATAAGTGATCGGTAAGAAGGGCTTAAGAAATGTCACCATCATATTAC
TTAGAAATGCTGGGTACAATACTCAATGACTAACCAAAATCAAAACGATA
GCAGCAACGTTAAAGTATTTGTGNTTAATCTGAGGATCTTCATATTGTAT
GGTCTAACTTGTTCACGTCCGNNCCANGNCCCGAATGCTCATTCAGAAAT
AAAGCCTTAATAATCATTGCCAAAAATAACNAAAAATCTTTGGAGGGGCC
TGTTGCATTTCATGTAATGTGGTTGATTAAATAGCTAAGATGGCTTCTAT
ATTTCATTTTGGTGCATTGTTTTATCAATATCTTACAACGTACGGCTCAT
GTAAAGTAGAAATACAATTTATTCACTTGAGAGATGGCTTAGTGCTTTTT
CAGAGGAAGTGAGTTTGCTTGTCAGTATCTCTGTTGGGGATAGCTTAGAT
ATACCTATTATCTCCATATCTAAAGGATCTGCTCTCTCTTCTGGCCTGCA
AGATCAATCTCACAATTCTGTATACACACACACACACACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_k18.g1 MSMg01no233_k18.g1 CHROMAT_FILE:
MSMg01no233_k18.g1 PHD_FILE: MSMg01no233_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:25 2005
         (199 letters)



>mm_chr4_17666124_17666722
          Length = 599

 Score =  339 bits (175), Expect = 1e-97
 Identities = 187/191 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcatttcatgtaatgtggttgattaaatagctaagatggcttctatatttcattttgg 60
           ||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 391 ttgcatttcatgtaatgtgattgattaaatagctaggatggcttctaaatttcattttgg 332

                                                                       
Query: 61  tgcattgttttatcaatatcttacaacgtacggctcatgtaaagtagaaatacaatttat 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 331 tgcattgttttatcaatatcttacaatgtacggctcatgtaaagtagaaatacaatttat 272

                                                                       
Query: 121 tcacttgagagatggcttagtgctttttcagaggaagtgagtttgcttgtcagtatctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tcacttgagagatggcttagtgctttttcagaggaagtgagtttgcttgtcagtatctct 212

                      
Query: 181 gttggggatag 191
           |||||||||||
Sbjct: 211 gttggggatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)