Query= MSMg01no233_p05.b1 MSMg01no233_p05.b1 CHROMAT_FILE:
MSMg01no233_p05.b1 PHD_FILE: MSMg01no233_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:46 2005
(314 letters)
>mm_chr4_61864562_61865275
Length = 714
Score = 592 bits (306), Expect = e-173
Identities = 309/310 (99%)
Strand = Plus / Plus
Query: 5 gaattcattaagagaaaatatgacacattagggaactggtgtgcaggtagaagacaggga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaagagaaaatatgacacattagggaactggtgtgcaggtagaagacaggga 264
Query: 65 caattgaggattcttttttagatttggtaaacagaaacgagattgagagttaagagctca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caattgaggattcttttttagatttggtaaacagaaacgagattgagagttaagagctca 324
Query: 125 gcgatgggcatacaggatggaaaggggttggggaaggagctgggcacgtcaggctgctga 184
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 gcgatgggcatacaggatggaaaggggttggggaaggagctgggcacgtcgggctgctga 384
Query: 185 gccctggacttcagctttccccctatcacagagtggtggctgattgtacttttgctcttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccctggacttcagctttccccctatcacagagtggtggctgattgtacttttgctcttt 444
Query: 245 atgaaagtacatgcatcactagctcctcagaagcatggcatttggaattgcagcacctct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgaaagtacatgcatcactagctcctcagaagcatggcatttggaattgcagcacctct 504
Query: 305 cctatgaaga 314
||||||||||
Sbjct: 505 cctatgaaga 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_p05.g1 MSMg01no233_p05.g1 CHROMAT_FILE:
MSMg01no233_p05.g1 PHD_FILE: MSMg01no233_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:47 2005
(290 letters)
>mm_chr4_62025761_62026449
Length = 689
Score = 540 bits (279), Expect = e-158
Identities = 286/289 (98%), Gaps = 3/289 (1%)
Strand = Plus / Minus
Query: 1 ctaaaaaatttaactgacaaagaagagatttattccatgtggccacactgggaaaagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctaaaaaatttaactgacaaagaagagatttattccatgtggccacactgggaaaagggg 428
Query: 61 -aaaaaaatccagttatagccccctccctgcctacacacacagaatctgccttcaggatt 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaaaaaaatccagttatagccccctccctgcctacacacacagaatctgccttcaggatt 368
Query: 120 ctgaagagaaggaagattcagtagagggcctgaaagcagtgatagtcaaggtatggtctc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctgaagagaaggaagattcagtagagggcctgaaagcagtgatagtcaaggtatggtctc 308
Query: 180 gacattattgtgtcttctgtaataaacaaaaactgtgtctaacaagtttaaacctctttc 239
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gacattat--tgtcttctgtaataaacaaaaactgtgtctaacaagtttaaacctctttc 250
Query: 240 caggagtaagggttcctcttggacggcccaggtgtcagacctttttttc 288
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 caggagtaagggttcctcttggacggcccaggtgtcagacctttttttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space: 191080
Effective search space used: 191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
