BAC Information

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BAC

Clone NameMSMg01-234C05
Chromosome4 (Build37)
Map Location 50,322,771 - 50,391,729
singlet/doubletdoublet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234C05.T7 (MSMg01no234_c05.b1)MSMg01-234C05.TJ (MSMg01no234_c05.g1)
ACCAG400120AG400121
length728719
length of high quality
(start - end)
629 (74 - 702)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no234_c05.b1 PHD_FILE: MSMg01no234_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:01 2005CHROMAT_FILE: MSMg01no234_c05.g1 PHD_FILE: MSMg01no234_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,391,396 - 50,391,729)(50,322,771 - 50,323,057)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCAGAGGATCCGC
GGAATTCCAGAGGATTTCCCTGTAGATCAACAGAACCCCAGCTCCCAACT
TTGGCAAAAACATCCTGTTTGGCCCCAGGCCATCCAGATTATTAGAAGTC
CAATACCCAAATGTGGTAGAGACCCTCTTCTCAATCACAAAGCACTTCAG
CCAGAAGACCAGAGAGAAAATGAAAACCAAGGAAGAAAACATCCATCCAG
CAAAGACAAGCCCAAAGATCATCACCTAGCTCTATGATCATTCCAAATGC
AGATGCCTAGATTCCAGTGTAAGAACATAATTAACAACAAGTAGGACAGT
GTGTCACAAGCAGAGCCCAGCCATCCCACTACAGCAAACATAACACACCT
AAGCACATGAGAACAACCTTAAAATCAACTTTATAAAGATAATAGAGCTC
CTTAAAGAAGAAATTAATAAATCCAGTAAAGAAACTGAGGAAAATACCGT
CACAATAATGGGAGAAAATCAATAATTCCATTACAGAATGTCAAGAAAGC
CAAGAAAAACCAAACAAATAGTTGAAAGAAAAAATATAACTGTTCAAGAT
CTGAAGATTGATTAAAAAAAGCAATAAAGAAGACACAAACTAAGGAATTC
TTGAGATGGGACATCTAGGTTAATGGACAGGAACTAAAGGCACAGCAACA
TCAACAGAATACTAGAGATAGAAGATGC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAGTGTGATATGTATTGATTTTTATT
TTCTTAATATATCTTTAGGTTTATTATTATAGGCTTATATTTCATTAATT
CTTTTAAAATGAATTTCTTGTAGGAACTGAGTGATGCAAAGGTAATGATA
AGCATTTATTTATGGGATATTTATATCATGAGCTCATTATTTACAATTCT
GTAGTTTATAGATTCATGATATTTTCTTATATGTGTAAAAAGTTATAAGC
ATGAATGCACCCCAGCTTACATTTGCAGAATTTGGTGTAGATAACCTGTC
TTTTAGCTTATTTCTTTTTGCACCGCACCCCCCCAGTATAAGTAAAGAAG
CCCGTGTTGGTAAAAGAAGGTGCACTTCTTCTTCAGTTCATGAAATTGTC
AAGGATATTCACAGATATGGAATTGGCTAAACTTGTCAGGTCAAGGGGCA
GACGAAAAGTCATGAAAAGTCCTGAGGAAACCTGTAGGAAGGATGGAAGG
GACGGCTTCATGCTTTACGGCTAGAAAGGAGGAAACATGAAAGGGTTCTG
TGACAAGAGAGTAAGACCACATTATATACATGCATACGCTGTCAAAAACA
TACACAGTTAATTTTTATAGAAGCATGCATAGAATAACCCAAATGTTCGC
GACTTAGTATCTAAGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_c05.b1 MSMg01no234_c05.b1 CHROMAT_FILE:
MSMg01no234_c05.b1 PHD_FILE: MSMg01no234_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:01 2005
         (629 letters)



>mm_chr4_50391396_50392424
          Length = 1029

 Score =  623 bits (322), Expect = 0.0
 Identities = 331/334 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatcaacagaaccccagctcccaactttggcaaaaacatcctgtttggccccaggccat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 334 agatcaacagaaccccagctcccaactttggcaaaaacatcctgtttggccagaggccat 275

                                                                       
Query: 61  ccagattattagaagtccaatacccaaatgtggtagagaccctcttctcaatcacaaagc 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ccagattattagaagtccaatccccaaatgtggtagagaccctcttctcaatcacaaagc 215

                                                                       
Query: 121 acttcagccagaagaccagagagaaaatgaaaaccaaggaagaaaacatccatccagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 acttcagccagaagaccagagagaaaatgaaaaccaaggaagaaaacatccatccagcaa 155

                                                                       
Query: 181 agacaagcccaaagatcatcacctagctctatgatcattccaaatgcagatgcctagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 agacaagcccaaagatcatcacctagctctatgatcattccaaatgcagatgcctagatt 95

                                                                       
Query: 241 ccagtgtaagaacataattaacaacaagtaggacagtgtgtcacaagcagagcccagcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  ccagtgtaagaacataattaacaacaagtaggacagtgtgtcacaagcagagcccagcca 35

                                             
Query: 301 tcccactacagcaaacataacacacctaagcaca 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 34  tcccactacagcaaacataacacacctaagcaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no234_c05.g1 MSMg01no234_c05.g1 CHROMAT_FILE:
MSMg01no234_c05.g1 PHD_FILE: MSMg01no234_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:01 2005
         (288 letters)



>mm_chr4_50322571_50323258
          Length = 688

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagtgtgatatgtattgatttttattttcttaatatatctttaggtttattattatagg 60
           |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ctagtgtgatatatattgatttttattttcttaatatatctctaggtttattattatagg 260

                                                                       
Query: 61  cttatatttcattaattcttttaaaatgaatttcttgtaggaactgagtgatgcaaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttatatttcattaattcttttaaaatgaatttcttgtaggaactgagtgatgcaaaggt 320

                                                                       
Query: 121 aatgataagcatttatttatgggatatttatatcatgagctcattatttacaattctgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgataagcatttatttatgggatatttatatcatgagctcattatttacaattctgta 380

                                                                       
Query: 181 gtttatagattcatgatattttcttatatgtgtaaaaagttataagcatgaatgcacccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttatagattcatgatattttcttatatgtgtaaaaagttataagcatgaatgcacccc 440

                                                          
Query: 241 agcttacatttgcagaatttggtgtagataacctgtcttttagctta 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcttacatttgcagaatttggtgtagataacctgtcttttagctta 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)