Query= MSMg01no234_c13.b1 MSMg01no234_c13.b1 CHROMAT_FILE:
MSMg01no234_c13.b1 PHD_FILE: MSMg01no234_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:03 2005
(239 letters)
>mm_chr4_131525709_131526347
Length = 639
Score = 395 bits (204), Expect = e-114
Identities = 228/236 (96%), Gaps = 2/236 (0%)
Strand = Plus / Minus
Query: 1 cataataatgttgtatgcttccataaaagagtattcaaatctaataaaagtctcagtaca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cataataaagttgtatgcttccataaaagagtattcaaatctaataaaagtctcagtaca 247
Query: 61 agaaagaatgagggcctgttatctgaacgtctcattcagagccctggagatggctccatg 120
||||||||||||||||||||||||||| |||||| ||||||||||||||||||| || ||
Sbjct: 246 agaaagaatgagggcctgttatctgaatgtctcaatcagagccctggagatggcgccgtg 187
Query: 121 ggtgaaggtgcttggcacataaagctgagagcttgggttcaatccctgaccccaaagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggtgaaggtgcttggcacataaagctgagagcttgggttcaatccctgaccccaaagtga 127
Query: 181 aaggaaagactcaattgtccc-gggttaccctctgacctccacacacatgctgtga 235
||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||
Sbjct: 126 aaggaaagactcaattg-ccctgggttaccctctgacctctacacacatgctgtga 72
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no234_c13.g1 MSMg01no234_c13.g1 CHROMAT_FILE:
MSMg01no234_c13.g1 PHD_FILE: MSMg01no234_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:03 2005
(289 letters)
>mm_chr4_131403891_131404579
Length = 689
Score = 518 bits (268), Expect = e-151
Identities = 283/288 (98%)
Strand = Plus / Plus
Query: 1 agacccttccctgtattcctgtattccttcttgtctcagcagcggtatccctgacgacgc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agacccttccctgtattcctgtattccttcttgtctcagcagcggtatccttgacgacgc 260
Query: 61 tgttagaactgtctgcaggcacaatgtctgtggtattgatggcattccatgagggcaggc 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttagaactgtctgcaggcacagtgtctgtggtattgatggcattccatgagggcaggc 320
Query: 121 tggggctggtctttcctgatgagatgcagctggaccaacacagctcaccccaggagggaa 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 321 tggggctggtctttcctgatgagatacagctggaccaacacagctcaccccaggaggaaa 380
Query: 181 gcaagtattgggcctgcctcccaccaccacccactgctgtactcggcttccacttcccag 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gcaagtattgggcctgcctcccaccaccacccactggtgtactcggcttccacttcccag 440
Query: 241 actctaatttctgccctgcctgtctctacctactttctgccctcttct 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actctaatttctgccctgcctgtctctacctactttctgccctcttct 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
