BAC Information

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BAC

Clone NameMSMg01-234F11
Chromosome4 (Build37)
Map Location 78,288,865 - 78,289,150
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234F11.T7 (MSMg01no234_f11.b1)MSMg01-234F11.TJ (MSMg01no234_f11.g1)
ACCAG400266AG400267
length739728
length of high quality
(start - end)
327 (45 - 371)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no234_f11.b1 PHD_FILE: MSMg01no234_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:18 2005CHROMAT_FILE: MSMg01no234_f11.g1 PHD_FILE: MSMg01no234_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATCTTTCCATGACTTTTATCATGAAGGGGTGTTGGATTTTGTC
AAATGCTTTCCCAGCATCTAACCCGATCATCATGTGGTTTTTGTCTTTGA
GTTTGTTCATGTATTGGATTACATTGATGGATTTCTGTATATTAAACCAT
CCCTGCATCCCTGCATCCCTGCATCTATGGGATTAAGTCTACTTGGTCAT
GATAGATGATCGTTTTGATGTGTTCTTGGATTCGGTTTGCCAAGATTTTA
TTTAGTATTTTTGTATCGATATTCATAAGGGAAATTGGTCTGAAGTTCTT
TTTCTTTGTTGGATCTTTTTGCGCCCTACGTATCAGAGTAATTGTGGCTT
CAAAGAATGAATTGGGTAGAGTACCTTCTGTTTCTATATTCTGGAATAAT
TTGAGGACATTTGGAATTTGGTCTTCTTTGAAACTCTAATAGAAGTCTGC
ACTAAACCCATCAGGTCCTGGGCTTTATTTTGGTTGGGAGACTATTAATG
AATGCTTCTATTTCTTTAAGAAAATGGGACTGTTTAGATTGTTAATGTGA
TTCTGTTTAACTTTGGTACATGGAATCTGTCTAGGAAGTTGTCCATTTCA
TCCAGGTTTTCCAGCTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGAT
GGTGTTTTGGGTTTCCTCAGGATCTGTTGTCATGTCTCC
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTCAGAGATGCCTATCCAGGT
TTTCCTCATAAACTGATATGTCCTGCAGCATGCTGCTGCATCCCTAGAAG
AAAAATGCAGCTCATGATGTAAACATCACATATTCCAATCAGGGCCCAAA
CATTAGCTAGACAGCTGCCTTTAGCAGCATTGATTACACCATGAGTCTGC
TAGTTCCATCCATCTTCACTGTTCTGCCCAGGGAAATGCAAACACAACTC
TCTTTACATGGCATGACAAATGGAGGTCTTTGTTCAACATCAATGGGAGG
AGTGGCCCTTGGTCTCTGTGAAGGCTCACCGCCCAGTGTAGGGGAATGCC
AGGAAGGGGATGCAGGAGTGGGTGGGTGAGTAGGGAAACACCCTCATAGA
AGCAGGGGAAGGGGACATGGGTTAGGAGTATTTTGGTGGAGAGACAAGTT
AAGGGGATAATATTTGAAATGTAAATAAAGGAAATATCTAATAAAAATTT
AAAAAAGAATTACATGATTATATCAGCCATTGTGAGTAAAGTAGTGACTG
ATTAATCAAATTAAAGAACAGCTTTTAGCTTATTCCGAAGTATGAATGTG
TAAAGAGTAAAGAAAGACGCATGGAAACACATCCTTTACCAGACATTCCT
GAGACATTTACTTATCTTCACTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_f11.g1 MSMg01no234_f11.g1 CHROMAT_FILE:
MSMg01no234_f11.g1 PHD_FILE: MSMg01no234_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:18 2005
         (290 letters)



>mm_chr4_78288708_78289395
          Length = 688

 Score =  522 bits (270), Expect = e-153
 Identities = 283/288 (98%), Gaps = 2/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttcagagatgcctatccaggttttcctcataaactgatatgtcctgcagcatgctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 actttcagagatgcctatccaggttttcctcataaactgatatgtcctgcagcatgctgc 384

                                                                       
Query: 61  tgcatccctagaagaaaaatgcagctcatgatgtaaacatcacatattccaatcagggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 383 tgcatccctagaagaaaaatgcagctcatgatgtaaacatcacatattccaatcaggg-- 326

                                                                       
Query: 121 caaacattagctagacagctgcctttagcagcattgattacaccatgagtctgctagttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaacattagctagacagctgcctttagcagcattgattacaccatgagtctgctagttc 266

                                                                       
Query: 181 catccatcttcactgttctgcccagggaaatgcaaacacaactctctttacatggcatga 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||
Sbjct: 265 catccatcttcactgttctgcccagggaaatacaaacacaactctctttacacagcatga 206

                                                           
Query: 241 caaatggaggtctttgttcaacatcaatgggaggagtggcccttggtc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 caaatggaggtctttgttcaacatcaatgggaggagtggcccttggtc 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 688
Length adjustment: 9
Effective length of query: 281
Effective length of database: 679
Effective search space:   190799
Effective search space used:   190799
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)