BAC Information

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BAC

Clone NameMSMg01-234I05
Chromosome4 (Build37)
Map Location 28,423,618 - 28,423,795
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141
Downstream geneLOC100040773, Epha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234I05.T7 (MSMg01no234_i05.b1)MSMg01-234I05.TJ (MSMg01no234_i05.g1)
ACCAG400380AG400381
length726837
length of high quality
(start - end)
325 (44 - 368)180 (74 - 253)
definitionCHROMAT_FILE: MSMg01no234_i05.b1 PHD_FILE: MSMg01no234_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:31 2005CHROMAT_FILE: MSMg01no234_i05.g1 PHD_FILE: MSMg01no234_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGATCCGCGG
AATTCTTAAAAAGTTCACGTTTCATGTTTCTTTAGGAAGAAGATTTCATT
GCACAAGCAATTTGTTTTTCTTTTCTCCATTTAATAATTATATTTTATAC
TATTTTACATGCGTGTATACCCGCATACTACATACCTGTCTAATGATCAT
GGAGGCTACAGTAAGACCTTAGATGCCCTGGAATTTCAGATGATTATGAG
TCTCCTTTGAACCCAGGTTTCTGGAAGAAAATCAAGAACTTATAATTTTC
GAGCCATCTCTCCAGATTATTTATATTTCTTTGGGAATAGTATGTTCATG
TTTCATTTATTGGTTGTTTTTTTCTGCCCCCCCCCCCTATTTATTTATTT
TATGTTTAATTTTTTAGTTATCTGCCACATTCTAGATAATGACTTTTTCT
TTGACACTACTGCCAATTTTTGGGTTTTTTTACTAATCTATGTAGGACAT
AGTTTTACACTAAACCCACCCTAAATCTTGCTATGTGTGGGCATCAGCCG
CTCTCTGCTTATTCCTTACCCAGTGTATAACCCCAAGATTGTAACCGCCT
GTTTCATCCAGTTCATGTCCTCTCCCATACATACTGTCTCTGTCCTTCCT
GAGCTCTGAGACCATTCTTTTTGCAGTTTACCATCCTTCGGCGGCGCTCT
TGCCATTCTATTCTTCACTGCGATCA
CAATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAGAGCTCTAAGTGTCTCAATATCCT
GAGTGTTGGGTTTAATGTCAGGTCCCACCATGCTCAGCTTGATAAGGTTT
GGACTTTCAGAGAGAAAAGGAAATGTAAAAAAGTCATCTCTATATAAGCC
TACCCCCCAAAATACTTTGAAAACATTAAAAATTTTGTGTGTGTGTGTGC
GCGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTCCCCCTTTTTTTATTTTA
CCCCCCCCCCTCTCTTACCCCCCTTTTTTTTTCCTTTTTACTCTTTCACC
CTTTCCAACCAACCAATTTTTTGGTGGTCTTCCCCGAACTTGCCCCCCTT
TTTTTTTTTTTCCCCCCCCTTCTTCGCTTTTTTTCCCCCCCCCCCCCAAC
AAACAAAAAAACATCCCTTTCTCCCCCGGTTGTTACCCCCACCCCCTAAC
CCTTTCTTCTTTTTTTTCCCCTCCCCCCCCCTCATTTTTTTTTTCCCACT
TCTTCTCACTTTTTTACCCCCTATCCCCCCTCTTCCCTCCATTTATTCTT
TACCCCCACCCACGCCCCCCCGCTTTTTTTTTTTTTATTTTTTCCTCTCT
TTCCCCTTTTCTCCGCCCCCATTCCCTTTTTTTTCCCTCCCTTCTCCATT
CTTTTCCTTTTTCCACCCCTTTTCTTTTTTATATCCTTATCTTATTATAC
TCTTACCCCACCCCCCACCCCCTTTTTACCCTCTTTCTATCTATACCTTC
CCCATTCCTCCCCCCATTCCCTTTTATCTTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_i05.g1 MSMg01no234_i05.g1 CHROMAT_FILE:
MSMg01no234_i05.g1 PHD_FILE: MSMg01no234_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:31 2005
         (180 letters)



>mm_chr4_28423418_28423997
          Length = 580

 Score =  275 bits (142), Expect = 1e-78
 Identities = 169/178 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagagctctaagtgtctcaatatcctgagtgttgggtttaatgtcaggtcccaccatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||
Sbjct: 378 atagagctctaagtgtctcaatatcctgagtgttgggtttaatgtcaggtataactatgc 319

                                                                       
Query: 61  tcagcttgataaggtttggactttcagagagaaaaggaaatgtaaaaaagtcatctctat 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tcagcttgataaggtttgaactttcagagagaaaaggaaatgtaaaaaagtcatctctat 259

                                                                     
Query: 121 ataagcctaccccccaaaatactttgaaaacattaaaaattttgtgtgtgtgtgtgcg 178
           || ||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct: 258 atgagcctaccccccaaaatactttgaaaacattaaaaatttagtgtgcgtgcgtgcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)