BAC Information

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BAC

Clone NameMSMg01-235B01
Chromosome4 (Build37)
Map Location 45,821,126 - 45,868,917
singlet/doubletdoublet
Overlap geneIgfbpl1, 1300002K09Rik
Upstream geneZcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1
Downstream geneTdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2, Gabbr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235B01.T7 (MSMg01no235_b01.b1)MSMg01-235B01.TJ (MSMg01no235_b01.g1)
ACCAG400758AG400759
length723730
length of high quality
(start - end)
671 (45 - 715)573 (77 - 649)
definitionCHROMAT_FILE: MSMg01no235_b01.b1 PHD_FILE: MSMg01no235_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:17 2005CHROMAT_FILE: MSMg01no235_b01.g1 PHD_FILE: MSMg01no235_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,821,126 - 45,821,792)(45,868,376 - 45,868,917)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTAAGCTGCACACACCAGAGCAATGTGGTTTCCCTTAATTAATTA
AAATATCACGTAATAAGTCTCTCTGATTTAACGTTCATGAGTTCCCAGGG
AAGCCCGAGAATGAGGAAAGTCATTAGAGGGGACAGTTCCCTGCTGCATG
GCTCTGATTGTCTGCCCTACATCCTCAATCCTGGGAGACAGGAGAGTGGC
ATTTTCTAAAGATAGGAATTAATTTCATTGCAAAACCTGTAGGAAAACTA
TGCACCTTACTAAGAGCCAGGTCTTTGGTGGTCTAGGATAGTAAGGAAAC
AAGCACCTTTGGGGTTGAACACAGGCTTTATAATCACTGTGGTACCCCCT
TACCTGTAGAGAATACATTCCAAGACTCCTCAGAGTCAATGTTCAGACTG
TGTTTCATGTGTATGCGTGTCCACGTTTGTGCAGATAAACAGATGTATGC
GGGCACATGGGCATGCAGGTGCACACATGAGTGTGTGTACCTGTGGAAGG
CAGAGGATCTCAGATGTCATTCTTCAGAAGTGACCTTATTTTTTGAGCCA
GGGTCTCTCATTGGCTGGTAGCTTGCTGATTAGGCTAGGCTGTCTAGACA
GTGAGCCCCAGGGATCTAGCTATCTTTACTTCCCNAGTCTGGAATTGAAG
GTTTGCACCATTGTACCCTGCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCACATGAGCACCCAGGAAAAAC
TGCCCCTAGAAAGCCAGGAACCTCAATGAACCTCGCTCCCAAGGGTGTGG
AGGGAACACCGGTCCTCTCATGAGTGAACGCTAGGAGGCGAGCTCTCCAA
GGAAAAAAATCAGAGGAAGAGGACTGCCAAGGGATTGGCAGAACACACTG
CTATCCCTCAGCTCTGGGGATTTGAATATGTAAATATTTATTTTAAATAT
ATAAATACCAAATGCTTTCGTGTGTAATATTTCATTTAATAATGTAGTCA
ATGCATATGTATAAACACAAGAACTGAAAATTATTTTCCATTACAAACAC
GCTCAGGTAATAAAAATTTTCACTATAAAAATTCTCAGGTAATAAAAAGG
AACCCATGAAGAAGGGTTTAAAAGCAACAGGAATAGAAGAATGTGCCATC
GTGCTCCATCGCCAGGTAAGTACCTTGAAATTTGTTGTCTGAACTTTATA
GAATAGGATATCTGAGCCGGCAACAACTTAAGCCCCAAACAAAATCCAAA
CGGAGGACAGAGAGAAATAAAACTGTGTGGCTGTGTCTCCCGCGGTGTGG
GAATGTAGACTCTTGTCTCCTCCCTCTGCAGTTTAGGAGTAGAAATGAAC
TCCTAGCTGAGCGTGGTCACAATCCAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_b01.b1 MSMg01no235_b01.b1 CHROMAT_FILE:
MSMg01no235_b01.b1 PHD_FILE: MSMg01no235_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:17 2005
         (671 letters)



>mm_chr4_45820922_45821992
          Length = 1071

 Score = 1230 bits (636), Expect = 0.0
 Identities = 660/668 (98%), Gaps = 2/668 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaagctgcacacaccagagcaatgtggtttcccttaattaattaaaatatca 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaagctgcagacaccagagcaatgtggtttcccttaattaattaaaatatca 264

                                                                       
Query: 65  cgtaataagtctctctgatttaacgttcatgagttcccagggaagcccgagaatgaggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgtaataagtctctctgatttaacgttcatgagttcccagggaagcccgagaatgaggaa 324

                                                                       
Query: 125 agtcattagaggggacagttccctgctgcatggctctgattgtctgccctacatcctcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtcattagaggggacagttccctgctgcatggctctgattgtctgccctacatcctcaa 384

                                                                       
Query: 185 tcctgggagacaggagagtggcattttctaaagataggaattaatttcattgcaaaacct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcctgggagacaggagagtggcattttctaaagataggaattaatttcattgcaaaacct 444

                                                                       
Query: 245 gtaggaaaactatgcaccttactaagagccaggtctttggtggtctaggatagtaaggaa 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 gtaggaaaactatgcaccttactaagagccaggtctttggtggtctaggatagtaaggga 504

                                                                       
Query: 305 acaagcacctttggggttgaacacaggctttataatcactgtggtacccccttacctgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acaagcacctttggggttgaacacaggctttataatcactgtggtacccccttacctgta 564

                                                                       
Query: 365 gagaatacattccaagactcctcagagtcaatgttcagactgtgtttcatgtgtatgcgt 424
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 565 gagaatacattccaagactcctcagagacaatgttcagactgtgtttcatgtgtatgcgt 624

                                                                       
Query: 425 gtccacgtttgtgcagataaacagatgtatgcgggcacatgggcatgcaggtgcacacat 484
           |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 625 gtccacgtttgtgcagataaacaggtgtatgcgggcacatgagcatgcaggtgcacacat 684

                                                                       
Query: 485 gagtgtgtgtacctgtggaaggcagaggatctcagatgtcattcttcagaagtgacctta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gagtgtgtgtacctgtggaaggcagaggatctcagatgtcattcttcagaagtgacctta 744

                                                                       
Query: 545 ttttttgagccagggtctctcattggctggtagcttgctgattaggctaggctgtctaga 604
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttttttgagccagggtctctcgttggctggtagcttgctgattaggctaggctgtctaga 804

                                                                       
Query: 605 cagtgagccccagggatctagctatctttacttcccnag-tctggaattgaaggtttgca 663
           |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 805 cagtgagccccagggatctagctatctttacttccc-aggtctggaattgaaggtttgca 863

                   
Query: 664 ccattgta 671
           ||||||||
Sbjct: 864 ccattgta 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no235_b01.g1 MSMg01no235_b01.g1 CHROMAT_FILE:
MSMg01no235_b01.g1 PHD_FILE: MSMg01no235_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:17 2005
         (573 letters)



>mm_chr4_45867945_45868917
          Length = 973

 Score =  994 bits (514), Expect = 0.0
 Identities = 535/542 (98%), Gaps = 1/542 (0%)
 Strand = Plus / Minus

                                                                       
Query: 33  gaaagccaggaacctcaatgaacctcgctcccaagggtgtggagggaacaccggtcctct 92
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 gaaagccaggaacctcaatgaacctcgctcccaagggtgtggagggaacaccggtcctct 914

                                                                       
Query: 93  catgagtgaacgctaggaggcgagctctccaagg-aaaaaaatcagaggaagaggactgc 151
           ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 913 catgagtgaacgctagggggcgagctctccaaggaaaaaaaatcagaggaagaggactgc 854

                                                                       
Query: 152 caagggattggcagaacacactgctatccctcagctctggggatttgaatatgtaaatat 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 caagggattggcagaacacactgctatccctcagctctggggatttgaatatgtaaatat 794

                                                                       
Query: 212 ttattttaaatatataaataccaaatgctttcgtgtgtaatatttcatttaataatgtag 271
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 793 ttattttaaatatataaataccaaatgctttcgcgtgtaatatttcatttaataatgtag 734

                                                                       
Query: 272 tcaatgcatatgtataaacacaagaactgaaaattattttccattacaaacacgctcagg 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tcaatgcatatgtataaacacaagaactgaaaattattttccattacaaacacgctcagg 674

                                                                       
Query: 332 taataaaaattttcactataaaaattctcaggtaataaaaaggaacccatgaagaagggt 391
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 taataaaatttttcactataaaaattctcaggtaataaaaaggaacccatgaagaagggt 614

                                                                       
Query: 392 ttaaaagcaacaggaatagaagaatgtgccatcgtgctccatcgccaggtaagtaccttg 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttaaaagcaacaggaatagaagaatgtgccatcgtgctccatcgccaggtaagtaccttg 554

                                                                       
Query: 452 aaatttgttgtctgaactttatagaataggatatctgagccggcaacaacttaagcccca 511
           ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 553 aaattggttgtctgaactttatagaataggatgtctgagccggcaataacttaagcccca 494

                                                                       
Query: 512 aacaaaatccaaacggaggacagagagaaataaaactgtgtggctgtgtctcccgcggtg 571
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aacaaaatccaaacggaggacagagagaaataaaactgtgtggctgtgtctcccgcggtg 434

             
Query: 572 tg 573
           ||
Sbjct: 433 tg 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)