Query= MSMg01no235_b01.b1 MSMg01no235_b01.b1 CHROMAT_FILE:
MSMg01no235_b01.b1 PHD_FILE: MSMg01no235_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:17 2005
(671 letters)
>mm_chr4_45820922_45821992
Length = 1071
Score = 1230 bits (636), Expect = 0.0
Identities = 660/668 (98%), Gaps = 2/668 (0%)
Strand = Plus / Plus
Query: 5 gaattcattaagctgcacacaccagagcaatgtggtttcccttaattaattaaaatatca 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaagctgcagacaccagagcaatgtggtttcccttaattaattaaaatatca 264
Query: 65 cgtaataagtctctctgatttaacgttcatgagttcccagggaagcccgagaatgaggaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgtaataagtctctctgatttaacgttcatgagttcccagggaagcccgagaatgaggaa 324
Query: 125 agtcattagaggggacagttccctgctgcatggctctgattgtctgccctacatcctcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtcattagaggggacagttccctgctgcatggctctgattgtctgccctacatcctcaa 384
Query: 185 tcctgggagacaggagagtggcattttctaaagataggaattaatttcattgcaaaacct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcctgggagacaggagagtggcattttctaaagataggaattaatttcattgcaaaacct 444
Query: 245 gtaggaaaactatgcaccttactaagagccaggtctttggtggtctaggatagtaaggaa 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 gtaggaaaactatgcaccttactaagagccaggtctttggtggtctaggatagtaaggga 504
Query: 305 acaagcacctttggggttgaacacaggctttataatcactgtggtacccccttacctgta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acaagcacctttggggttgaacacaggctttataatcactgtggtacccccttacctgta 564
Query: 365 gagaatacattccaagactcctcagagtcaatgttcagactgtgtttcatgtgtatgcgt 424
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 565 gagaatacattccaagactcctcagagacaatgttcagactgtgtttcatgtgtatgcgt 624
Query: 425 gtccacgtttgtgcagataaacagatgtatgcgggcacatgggcatgcaggtgcacacat 484
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 625 gtccacgtttgtgcagataaacaggtgtatgcgggcacatgagcatgcaggtgcacacat 684
Query: 485 gagtgtgtgtacctgtggaaggcagaggatctcagatgtcattcttcagaagtgacctta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gagtgtgtgtacctgtggaaggcagaggatctcagatgtcattcttcagaagtgacctta 744
Query: 545 ttttttgagccagggtctctcattggctggtagcttgctgattaggctaggctgtctaga 604
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttttttgagccagggtctctcgttggctggtagcttgctgattaggctaggctgtctaga 804
Query: 605 cagtgagccccagggatctagctatctttacttcccnag-tctggaattgaaggtttgca 663
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 805 cagtgagccccagggatctagctatctttacttccc-aggtctggaattgaaggtttgca 863
Query: 664 ccattgta 671
||||||||
Sbjct: 864 ccattgta 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_b01.g1 MSMg01no235_b01.g1 CHROMAT_FILE:
MSMg01no235_b01.g1 PHD_FILE: MSMg01no235_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:17 2005
(573 letters)
>mm_chr4_45867945_45868917
Length = 973
Score = 994 bits (514), Expect = 0.0
Identities = 535/542 (98%), Gaps = 1/542 (0%)
Strand = Plus / Minus
Query: 33 gaaagccaggaacctcaatgaacctcgctcccaagggtgtggagggaacaccggtcctct 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 gaaagccaggaacctcaatgaacctcgctcccaagggtgtggagggaacaccggtcctct 914
Query: 93 catgagtgaacgctaggaggcgagctctccaagg-aaaaaaatcagaggaagaggactgc 151
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 913 catgagtgaacgctagggggcgagctctccaaggaaaaaaaatcagaggaagaggactgc 854
Query: 152 caagggattggcagaacacactgctatccctcagctctggggatttgaatatgtaaatat 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 caagggattggcagaacacactgctatccctcagctctggggatttgaatatgtaaatat 794
Query: 212 ttattttaaatatataaataccaaatgctttcgtgtgtaatatttcatttaataatgtag 271
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 793 ttattttaaatatataaataccaaatgctttcgcgtgtaatatttcatttaataatgtag 734
Query: 272 tcaatgcatatgtataaacacaagaactgaaaattattttccattacaaacacgctcagg 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tcaatgcatatgtataaacacaagaactgaaaattattttccattacaaacacgctcagg 674
Query: 332 taataaaaattttcactataaaaattctcaggtaataaaaaggaacccatgaagaagggt 391
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 taataaaatttttcactataaaaattctcaggtaataaaaaggaacccatgaagaagggt 614
Query: 392 ttaaaagcaacaggaatagaagaatgtgccatcgtgctccatcgccaggtaagtaccttg 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttaaaagcaacaggaatagaagaatgtgccatcgtgctccatcgccaggtaagtaccttg 554
Query: 452 aaatttgttgtctgaactttatagaataggatatctgagccggcaacaacttaagcccca 511
||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 553 aaattggttgtctgaactttatagaataggatgtctgagccggcaataacttaagcccca 494
Query: 512 aacaaaatccaaacggaggacagagagaaataaaactgtgtggctgtgtctcccgcggtg 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aacaaaatccaaacggaggacagagagaaataaaactgtgtggctgtgtctcccgcggtg 434
Query: 572 tg 573
||
Sbjct: 433 tg 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|