Query= MSMg01no235_b12.b1 MSMg01no235_b12.b1 CHROMAT_FILE:
MSMg01no235_b12.b1 PHD_FILE: MSMg01no235_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:19 2005
(529 letters)
>mm_chr4_6206828_6207756
Length = 929
Score = 946 bits (489), Expect = 0.0
Identities = 519/529 (98%), Gaps = 1/529 (0%)
Strand = Plus / Plus
Query: 1 ttacatagtcagtaccagccagccaggactatatagcacaaacttttctttaaaaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttacatagtcagtaccagccagccaggactatatagcacaaacttttctttaaaaaaaaa 261
Query: 61 aaaagaaagaaaataaaattttgaatcataactgcctggttttagaattataggtatcta 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaa-gaaagaaaataaaattttgaatcataactgcctggttttagaattataggtatcta 320
Query: 121 gtaaaactcgagtatagaaaaatatatgtgtgtgagtcactggaaagtacttaagtttaa 180
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gtaaaactcgagtataaaaaaatatatgtgtgtgagtcactggaaactacttaagtttaa 380
Query: 181 gggaagtacagggtaccttaatccagtgggacagtgtaatgtgccatgtacctagctata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaagtacagggtaccttaatccagtgggacagtgtaatgtgccatgtacctagctata 440
Query: 241 tgttaattagtatttattccatgcattttgttcacattaacttatcacctgcttagtgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttaattagtatttattccatgcattttgttcacattaacttatcacctgcttagtgaa 500
Query: 301 aagtatttcttagatgttggagataagtgataaacagacaaaatagactccccatgggga 360
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 aggtatttcttagatgctggagataagtgataaacagacaaaatagactccccataggga 560
Query: 361 tatagccaaccaaaagttaggagggatgctgcctggcttctggcatcatttctattatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatagccaaccaaaagttaggagggatgctgcctggcttctggcatcatttctattatta 620
Query: 421 ggaaaggttaaagcaaagcatgaatgttttctgccaagaccttcagtatcttgcctccct 480
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 ggaaaggttaaagcaaagcattaatgttttctgccaagaccttcagtgtcttgcctccct 680
Query: 481 aaccccatgatagcactgtgacatgagtgctgttgtctctctttgcaaa 529
||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 aacgccatgatagcactgtgagatgagtgctgttgtctctctttgcaaa 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_b12.g1 MSMg01no235_b12.g1 CHROMAT_FILE:
MSMg01no235_b12.g1 PHD_FILE: MSMg01no235_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:19 2005
(290 letters)
>mm_chr4_6354794_6355480
Length = 687
Score = 468 bits (242), Expect = e-136
Identities = 274/286 (95%), Gaps = 3/286 (1%)
Strand = Plus / Minus
Query: 1 tcctcctgctgggaagctcggggtaagacacccaggaaaggctgtggtccatgagaagct 60
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 483 tcctcctgctgggaagctcggggtaagacacccagaaaaggctgtggtgaatgagaagct 424
Query: 61 gatggggagagggggactgcctgcttctccttcactgcagacagtgggtctctggcttcc 120
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gatggtgagagggggactgcttgcttctccttcactgcagacagtgggtctctggcttcc 364
Query: 121 gtgagtgctggtgtaaggttctcacagctagtgtggcatcatgtatgatgccacagtcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtgagtgctggtgtaaggttctcacagctagtgtggcatcatgtatgatgccacagtcag 304
Query: 181 gagctgtaggaccgtcccctcccaccatctaggaaaccatcttctctttgagaagaacac 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 303 cagctgtaggaccgtcccctcccaccatctaggaaatcatcttctctttgagaa---cac 247
Query: 241 tagacctaattctatgccaggaagtgaacacaaactcagatctcta 286
||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 246 tagacctaaaactatgccaggaagtgaacacaaactcagatctcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 687
Length adjustment: 9
Effective length of query: 281
Effective length of database: 678
Effective search space: 190518
Effective search space used: 190518
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
