BAC Information

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BAC

Clone NameMSMg01-235D05
Chromosome4 (Build37)
Map Location 12,570,233 - 12,570,706
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235D05.T7 (MSMg01no235_d05.b1)MSMg01-235D05.TJ (MSMg01no235_d05.g1)
ACCAG400851AG400852
length721726
length of high quality
(start - end)
504 (44 - 547)540 (77 - 616)
definitionCHROMAT_FILE: MSMg01no235_d05.b1 PHD_FILE: MSMg01no235_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:28 2005CHROMAT_FILE: MSMg01no235_d05.g1 PHD_FILE: MSMg01no235_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGAATCCGCGG
AATTCTCTTGTATGCACCCACACAGCAACTTAAAAGATAGTGTCTTTTCC
AATCAGCTTGGGAAACAACCCCAACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACAAGCACTTCATGAAAATTC
TGTAAACAACTTTTAACACAATGGTCTCCTGTCGTAAGGGAAAGTAAGGG
AAACTTTGCCACTGAACTATCACCAGAAAACTTCATGTCTGGAACCCCAT
CCACTTCATTCAGGTTGAATGAGGCTGATATTTAAAGTAAAAATATTTAT
TAAGGTGAATGACCACTCAAATTCATGACCTGAGATTCAAAGGTGGCGAG
GTATAAAATTTCTAGCTTGCAACAACGGCAGTCAGACTTTAGTCAGACTC
TCTGAACCAATGTACTGGCTTTTCAGTTGGCCAAAACACCTAGCAACCAC
TTTTTATGTAAATGCATTAATCACTCATTTATTTATACCATTTATTAGAA
ACTAATTATTATAGGACATTCAAAACTCACTTAGGGACCTATTCATTTAA
TAATCAATTACACAGATTGCATAATGCACTAATTAGCCTAAATGATTTCA
GGGTTTTGGAAAGTATTTGTAATTTACAAAATATATCCCGATAAGTTAAT
ACAAATGATGCATAAAATAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGCCCACAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_d05.b1 MSMg01no235_d05.b1 CHROMAT_FILE:
MSMg01no235_d05.b1 PHD_FILE: MSMg01no235_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:28 2005
         (504 letters)



>mm_chr4_12570003_12570906
          Length = 904

 Score =  812 bits (420), Expect = 0.0
 Identities = 467/498 (93%), Gaps = 24/498 (4%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctcttgtatgcacccacacagcaacttaaaagatagtgtcttttccaatcagctt 66
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gaattctcttgtatgcagtcacacagcaacttaaaagatagtgtcttttccaatcagctt 290

                                                                       
Query: 67  gggaaacaaccccaacacacacacacacacacacacacacacacacacacacacacacac 126
           ||||||||||||||                        ||||| ||||||||||||||||
Sbjct: 291 gggaaacaacccca------------------------acacatacacacacacacacac 326

                                                                       
Query: 127 acacacacacacaagcacttcatgaaaattctgtaaacaacttttaacacaatggtctcc 186
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 327 acacacacacacaagcacttcatgaaaattctataaacaacttttaacacaatggtctcc 386

                                                                       
Query: 187 tgtcgtaagggaaagtaagggaaactttgccactgaactatcaccagaaaacttcatgtc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgtcgtaagggaaagtaagggaaactttgccactgaactatcaccagaaaacttcatgtc 446

                                                                       
Query: 247 tggaaccccatccacttcattcaggttgaatgaggctgatatttaaagtaaaaatattta 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tggaaccccatccacttcattcaggttgaatgaggctgatatttaaagtaaaaatattta 506

                                                                       
Query: 307 ttaaggtgaatgaccactcaaattcatgacctgagattcaaaggtggcgaggtataaaat 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttaaggtgaatgaccactcaaattcatgacctgagattcaaaggtggcgaggtataaaat 566

                                                                       
Query: 367 ttctagcttgcaacaacggcagtcagactttagtcagactctctgaaccaatgtactggc 426
           |||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttctagcttgtaagaatggcagtcagactttagtcagactctctgaaccaatgtactggc 626

                                                                       
Query: 427 ttttcagttggccaaaacacctagcaaccactttttatgtaaatgcattaatcactcatt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttttcagttggccaaaacacctagcaaccactttttatgtaaatgcattaatcactcatt 686

                             
Query: 487 tatttataccatttatta 504
           ||||||||||||||||||
Sbjct: 687 tatttataccatttatta 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)