Query= MSMg01no235_j01.b1 MSMg01no235_j01.b1 CHROMAT_FILE:
MSMg01no235_j01.b1 PHD_FILE: MSMg01no235_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:56 2005
(603 letters)
>mm_chr4_25707506_25708509
Length = 1004
Score = 795 bits (411), Expect = 0.0
Identities = 432/439 (98%), Gaps = 3/439 (0%)
Strand = Plus / Minus
Query: 5 gaattcctgtaaactgatgttcaggaactatgctttaagtagcaaggatctgataaacta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaattcctgtaaactgatgttcaggaactatgctttaagtagcaaggatctgataaacta 379
Query: 65 t-aagcaaaatcatctagttcagtggtccttaagcaagactttgagtctctagagcattt 123
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 378 taaagcaaaatcatctagttcagtggtccttaagcaagactttgagtctctagagaattt 319
Query: 124 aaccagaggatttattattcaacaattcataagacactcatatgtacataaatatgagta 183
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 318 aaccagaggatttattattcaacaattcataagacactcatatgtacagaaatatgagta 259
Query: 184 tttttctggagtagaacttttaatttttagattctttgagaagcttatggctaattgttt 243
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttttctggaatagaaattttaatttttagattctttgagaagcttatggctaattgttt 199
Query: 244 ttaaaaatttctttatttcatatatgtgagtacaccatctctgtcttcagacataccaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttaaaaatttctttatttcatatatgtgagtacaccatctctgtcttcagacataccaga 139
Query: 304 atagggcattggataccattactgatggttgtgagccaccatgtggttactgggaattga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 atagggcattggataccattactgatggttgtgagccaccatgtggttactgggaattga 79
Query: 364 acttatgacctctggaaga-acagtcagggctcttaactgctgagccatctctccagccc 422
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 78 acttatgacctctggaagaga-agtcagggctcttaactgctgagccatctctccagccc 20
Query: 423 ccttgtgacctaatttatg 441
|||||||||||||||||||
Sbjct: 19 ccttgtgacctaatttatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1004
Length adjustment: 10
Effective length of query: 593
Effective length of database: 994
Effective search space: 589442
Effective search space used: 589442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_j01.g1 MSMg01no235_j01.g1 CHROMAT_FILE:
MSMg01no235_j01.g1 PHD_FILE: MSMg01no235_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:56 2005
(249 letters)
>mm_chr4_25549797_25550446
Length = 650
Score = 445 bits (230), Expect = e-129
Identities = 245/250 (98%), Gaps = 1/250 (0%)
Strand = Plus / Plus
Query: 1 caagaaaaacaactgagagcaagcattaggcttagggaagactgaagtactcaaattagt 60
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 caagaaaaacgactgagagcaagcattaggcttagagaagactgaagtactcaaattagt 260
Query: 61 aattcaataaatggggattgttatgacacttttaaaaatggaatcattttacaaaacaga 120
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 aattcaataaatggggattgctatgacactttaaaaaatggaatcattttacaaaacaga 320
Query: 121 aagataaggataagttgttaaatcaatatatgaagccaactataattttgttaacaatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagataaggataagttgttaaatcaatatatgaagccaactataattttgttaacaatat 380
Query: 181 at-agagaagatatttttaaaggccagttttacttaaagttacagacaaaaattacccaa 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attagagaagatatttttaaaggccagttttacttaaagttacagacaaaaattacccaa 440
Query: 240 gatagcaaac 249
||||||||||
Sbjct: 441 gatagcaaac 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space: 153840
Effective search space used: 153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
