BAC Information

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BAC

Clone NameMSMg01-235P24
Chromosome4 (Build37)
Map Location 30,222,602 - 30,222,891
singlet/doubletsinglet
Overlap geneLOC665185
Upstream genenone
Downstream geneLOC619906, LOC100040864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235P24.T7 (MSMg01no235_p24.b1)MSMg01-235P24.TJ (MSMg01no235_p24.g1)
ACCAG401391AG401392
length718715
length of high quality
(start - end)		645 (46 - 690)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no235_p24.b1 PHD_FILE: MSMg01no235_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:27 2005CHROMAT_FILE: MSMg01no235_p24.g1 PHD_FILE: MSMg01no235_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACTAACAGAACCCAAGACCACTCACCATCATCAGAACGCAGCAC
TCCCACCCCACCTAGTCCTGGGCACCCCAACACAACCGAAAATCTAGACC
CAGATTTAAAAACATTTCTCATGATGATGATAGAGGACATCAAGAAGGAC
TTTCATAAGTCACTTAAATAATTACAGGAGAGCACTGCTAAAGAGTTACA
GGCCCTTGAAGAAAAGCAGGAAAACACAGCCAAACAGGTAGAAGTCCTTA
AAGAAAAACTGGAAAACACATCCAAACAGGTAATGGAAATGAACAAAACC
ATACTAGAACTAAAAAGGGAAGTAGACACAGTAAAGAAAACCCAAAGCAA
GGCAACGCTGGAGATAGAAACCCTAGGAAAGAGATCTGGAACCATAGATG
CGAGCATCAGCAACAGAATACAAGAAATGGAAGAGAGAATCTCAGGTGCA
GAAGATTCCATAGAGAACATCGAAACAACAGTCAAAGAAAATACAAAATG
CAAAAGGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAA
GACCAAACCTACGGATAATAGGAATTGATGAGAATGAAGATTTTCAACTT
AAAGGGCCAGCTAATATCTTCAACAAAATAATTGAAGAANACTTCCCAAA
CATAAAGAAAGAGATGCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTCTATTCCTTTGGTTAGAAG
GAAATAGAATGTACCCAATTAGTCTCACAATATTCCTGGTACCTCTAATG
TTGCTTGCAGTATTTTAAATTCTAAAGAGAGGTAAAACTGAAATTTCTCT
TTCTAGTGTTATGAGGGGTGGAAGAGGTGGCATTGAAGTAGTTCAGGTGA
GAAGCATCCATTCACAGTGGCTTTTGGCCAGTAGAACTTAGGACTTATCC
TGGTTCTGGGAAAAGACCTAAGTGGTATCTTCTATTCTTGAACCTTCTCA
AGTTTCTATCTAATGTTATTCTCATTGCGCGCCACTAGTAAATGTGGGAA
AAACACACTGACCATCTGGAACGCCTAAACACTACATAAAGTTTAAAATC
ATGCATCTGTGTGAAAATCCAGTAGGCCTAGGTAATGAAGATATGCTCTC
CATTTTCACTAAAATATGTTTTTAATGGAAAGGTGAAATAGAAGTGCAAC
TAAATACAACAATTTAAGTGACCAATGCATGATGGTGTATTTATCTTTAT
CTTTGTTTGTTTGTTTGGTTGCCTATACCTCCTGACTGTCTAAACTATTC
TCATCTTGCTAAATGTAATAATAATAAATTTTCCTTGACAAGTTTACTGG
TTTTACTTTAACAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_p24.g1 MSMg01no235_p24.g1 CHROMAT_FILE:
MSMg01no235_p24.g1 PHD_FILE: MSMg01no235_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:27 2005
         (291 letters)



>mm_chr4_30222401_30223091
          Length = 691

 Score =  493 bits (255), Expect = e-144
 Identities = 282/291 (96%), Gaps = 2/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   gtttctattcctttggttagaaggaaatagaatgtacccaattagt-ctcacaatattcc 60
           |||||||||| ||||| |||||||||||||||||| |||||||| | ||||  |||| ||
Sbjct: 491 gtttctattcttttggctagaaggaaatagaatgttcccaatta-tcctcagtatatccc 433

                                                                       
Query: 61  tggtacctctaatgttgcttgcagtattttaaattctaaagagaggtaaaactgaaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tggtacctctaatgttgcttgcagtattttaaattctaaagagaggtaaaactgaaattt 373

                                                                       
Query: 121 ctctttctagtgttatgaggggtggaagaggtggcattgaagtagttcaggtgagaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 372 ctctttctagtgttatgaggggtggaagaggtggcattgaagtagttcaggagagaagca 313

                                                                       
Query: 181 tccattcacagtggcttttggccagtagaacttaggacttatcctggttctgggaaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tccattcacagtggcttttggccagtagaacttaggacttatcctggttctgggaaaaga 253

                                                              
Query: 241 cctaagtggtatcttctattcttgaaccttctcaagtttctatctaatgtt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cctaagtggtatcttctattcttgaaccttctcaagtttctatctaatgtt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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