BAC Information

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BAC

Clone NameMSMg01-236G24
Chromosome4 (Build37)
Map Location 74,535,973 - 74,536,263
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c, LOC100040258, LOC100039814
Downstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236G24.T7 (MSMg01no236_g24.b1)MSMg01-236G24.TJ (MSMg01no236_g24.g1)
ACCAG401694AG401695
length754759
length of high quality
(start - end)
316 (46 - 361)294 (77 - 370)
definitionCHROMAT_FILE: MSMg01no236_g24.b1 PHD_FILE: MSMg01no236_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:00 2005CHROMAT_FILE: MSMg01no236_g24.g1 PHD_FILE: MSMg01no236_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTTCCGACTTTTAACATGAAGGGATGTTGAATTTTGTC
AAATGCTTTCTCAGCATCTAATGACCTGATCATGTGTTCTTTTTTCCTTT
GAGTTTGTTTATGTAGTGGATTGCACTGATGGATTGAACCATCCCTGCAT
CCCTGAGATGAAGTTTACTTGATCATGGTAAATGATCTTTTTGATGTGTT
CTTGGATATGGTTGGCAATAATTTTATTGGGTATTTTTCCATCTATATTG
ATAAGGGAGATTGGTCTGAAGCTCTCTTAATTTGGTGGGTCTTCATGTGG
TTTTGGTATCATATTGTTTGTGCCCTCTACACTAAATTAGGTAGTGTTCT
TTCTGTTTTGATTTTGCAGAATAGTTTGAAGAATATTGGTATTAGGTCTT
TTTTGGACCTCAAGCTGCTCCACAGAGCAATAGTGATTAAAATTGCATGG
TAACCATACAGTGACAGCCAGGTAGATCAATGGCATAGAATTGAACAATT
CAGCAATGAACCCACACACCAATGATCACTTGATCTTTGACAAAGAGGCT
AAAACCATCCAGTGGGAAAAAGAGAACATTTTCAAAATATAGTGCTGGTT
CAACTGGCATTAGCATGTAGAAGAATGCAAATCGACCCATTCTTGTCTCC
TTGTAGAATGTTCAAGTCCAAGTGAATCAAGGACCTTCACATAAACCAGA
TACA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTATATCATGGTAAGAAATATTG
AAAAGAAAAAATTCCACCTGCAAAGACTCTTCTCTTAACTATATATTTAA
AGCTTTTATAAATACTGCAATAAAGTGAGATTCATTGTCAGTTACATGCA
AACACCAGCCTGAGCTCACTTATCATCCAGATGACTGAGCTGGTGTTCAG
AGGAAACAGTATGACAGTCACGAATTTATACACCATCTCTTCAAAAAATC
TTCCTGCAAGGTAATAAATGCTTTGTTATACATTTAGATCTAATAGCCAA
TATGCAATTTTAAGAAAATTTATAAAAACCGCCCCCAAATAGGTCATACT
GGGAAATTCTATTTGCACGACAGTCAGTTGTTGCAATTCAGCTTTGTTAG
GAACTCATTGCATACACTAGCAAGATTGTGCTGATAGGACCCTGATATAG
CTGTCTCTAGTGAGACTACGCCGGGGCCTAGCAAACACAGAAGTGGATGC
TCACAGTCAGCTATTGGATGGAGCACAGGGCCCCCAATGGAGGAGCTAGA
GAAAATACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAACAAC
ATTATGAACTAACCAGTACCCGGGAGCTCTTGACTCTAGCTGCATATGTA
TCATAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACT
TGCAAACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_g24.g1 MSMg01no236_g24.g1 CHROMAT_FILE:
MSMg01no236_g24.g1 PHD_FILE: MSMg01no236_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:00 2005
         (294 letters)



>mm_chr4_74535773_74536465
          Length = 693

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%), Gaps = 1/292 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatatcatggtaagaaatattgaaaagaaaaaattccacctgcaaagactcttctctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tctatatcatggtaagaaatattgaaaagaaaaaattccacctgcaaagact-ttctctt 259

                                                                       
Query: 61  aactatatatttaaagcttttataaatactgcaataaagtgagattcattgtcagttaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aactatatatttaaagcttttataaatactgcaataaagtgagattcattgtcagttaca 319

                                                                       
Query: 121 tgcaaacaccagcctgagctcacttatcatccagatgactgagctggtgttcagaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 320 tgcaaacaccagcctgagctcacttatcatccagatgactgagctggtggtcagaggaaa 379

                                                                       
Query: 181 cagtatgacagtcacgaatttatacaccatctcttcaaaaaatcttcctgcaaggtaata 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 380 cagtatgacagtcacgaatttatacaccatctcttcaaaatatcttcctgcaaggtaata 439

                                                               
Query: 241 aatgctttgttatacatttagatctaatagccaatatgcaattttaagaaaa 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aatgctttgttatacatttagatctaatagccaatatgcaattttaagaaaa 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 693
Length adjustment: 9
Effective length of query: 285
Effective length of database: 684
Effective search space:   194940
Effective search space used:   194940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)