BAC Information

Click to search

BAC

Clone NameMSMg01-236K14
Chromosome4 (Build37)
Map Location 64,636,651 - 64,636,931
singlet/doubletsinglet
Overlap genenone
Upstream geneTnc
Downstream genePappa, Astn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236K14.T7 (MSMg01no236_k14.b1)MSMg01-236K14.TJ (MSMg01no236_k14.g1)
ACCAG401851AG401852
length735737
length of high quality
(start - end)
690 (46 - 735)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no236_k14.b1 PHD_FILE: MSMg01no236_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:17 2005CHROMAT_FILE: MSMg01no236_k14.g1 PHD_FILE: MSMg01no236_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTGACCAATACCGAATGGCTGAGAAGCACCTAAAGAAATGC
TCAACATTCTTAGTCATGAGGGAAATGCAAATCAAAACAACCCTGAGATT
TCACCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCA
GATACTGGCGAGGATGTGGAGAAAGTGGAACACTCCTTCATTGCTGATAG
GATTGCAAGCTGATACAAGCACTCTGGAAAGCAGCTTGGCGGTTCCTCAG
AAAATTGGACATTGTACTTCCTGAGGACCCAGATGTACCACTCCTGGGTA
TATACCCAGAAGATGCTTCAACATGTAATAAGGACACATGCTCCACTACC
CAGATGTCCTTCAAGAGAAGAATGGATACAGTAAATGTGGTACATTTATA
CAATGGAGTACTTCTCAGCTATTAAAAACAACGAATTCATGAAGTTCTTA
GGCAAATGGACGGAACTGGAAAATATGATCCCGAGTGAGGTAACCCAATC
ACAAAGGAACACATATGGTATATACTCAGTGATAAGTGGATATTAGCCCA
GACGCTCAGAATAGCCAAGATACAATTCACTGACCACATGAAGCTCAAGA
AGAAGGAAGACCAAAGTGTGGATACTTTAGTCCTTCTTAAAAGGGGGATC
AAAATACCCATGGGAGGAGATACAGCGACAAAGTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAGCAGCCTTACTCTAATGAGATG
GGAGACTGAGACAGAAGCATCCACAGAAATTTACAGCCCAAGTAAGCCAG
GATACACAGAACAAAGAAACAAGAGAGACACTGCTTAACAAGAAGACACT
GCTTAACAAGAGAGACACTGCTTAACAAGAAGAGAGCAAATCCTAGAAAG
CTGTCTTCTGACCATCACCCAGATCTCATGGAAGACACATACAAAGAGAG
TGGTTGGGGGAGGTGGGAGGAGAGGGAAAGAGAGAGAGAGGGCNAGAGAG
AGATTATTTTTTTACACCCCCCCCCCCCCAGATTTAAATGTTCTGCACTT
TTCCCATCTGAGACGTTACATATATAAGAGATATAGAATTGGTAAGTGCA
TCATTGAGAATTGTCTAAAAAGGAGCATTTCTCATTCTAAAAGATCATCC
CAACTATTCTCTATTGTTTCTGGATGGCCGGTCTACCTAACTTGGCACCA
TCACTGAGCAAGAAAGAGGAAGAAACTTCAATTTATGCTAGCCAAATATG
CTCTTCCCTTCTTTTGGATCACTTTCAGAAACCAGCACATTTTGTGCTAC
AAACCCCTGCTTCCACTGCAATATATGGCACCATCGACCTCTCTGTGACC
CTACCCGCCATTTTGAACTACTTCGGCTGCCCTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_k14.g1 MSMg01no236_k14.g1 CHROMAT_FILE:
MSMg01no236_k14.g1 PHD_FILE: MSMg01no236_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:17 2005
         (283 letters)



>mm_chr4_64636451_64637133
          Length = 683

 Score =  491 bits (254), Expect = e-143
 Identities = 274/281 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagcagccttactctaatgagatgggagactgagacagaagcatccacagaaatttaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagcagccttactctaatgagatgggagactgagacagaagcatccacagaaatttaca 260

                                                                       
Query: 61  gcccaagtaagccaggatacacagaacaaagaaacaagagagacactgcttaacaagaag 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gcccaagtaagccaggatacacagaacaaagaaccaagagagacactgcttaacaagaag 320

                                                                       
Query: 121 acactgcttaacaagagagacactgcttaacaagaagagagcaaatcctagaaagctgtc 180
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 acactgtttaacaagagagacactgcttaacaagaagagaacaaatcctagaaagctgtc 380

                                                                       
Query: 181 ttctgaccatcacccagatctcatggaagacacatacaaagagagtggttgggggaggtg 240
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ttctgaccatcactcagatctcatggaagacacatacaaagagagtggttgggggagggg 440

                                                    
Query: 241 ggaggagagggaaagagagagagagggcnagagagagatta 281
           ||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 441 ggaggagagggaaagggagagagagggcaagagagagatta 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)