Query= MSMg01no237_k16.b1 MSMg01no237_k16.b1 CHROMAT_FILE:
MSMg01no237_k16.b1 PHD_FILE: MSMg01no237_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:33 2005
(668 letters)
>mm_chr4_10332311_10333378
Length = 1068
Score = 932 bits (482), Expect = 0.0
Identities = 485/486 (99%)
Strand = Plus / Minus
Query: 5 gaattcctctaacttactgagcaccatactgctaacaaggatataacataacagaaagaa 64
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 486 gaattcctctaacttactgagcaccatactgctaacaaggatataacacaacagaaagaa 427
Query: 65 acaaggttgcaaattgcaacgatttttctattgacaagtcctcatatagactcaatttaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acaaggttgcaaattgcaacgatttttctattgacaagtcctcatatagactcaatttaa 367
Query: 125 taagaaaatattttgatgtttcaagagagacgagattttctttaataaagctttgactgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 taagaaaatattttgatgtttcaagagagacgagattttctttaataaagctttgactgt 307
Query: 185 atggagcagcttttggggagggaaggaagtgttgtgtgtttatgtaacatgcatgtgagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atggagcagcttttggggagggaaggaagtgttgtgtgtttatgtaacatgcatgtgagt 247
Query: 245 gcatgaagaacagtacacgagtccatgtgtacatgaaacacatggaggtcagaggacaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gcatgaagaacagtacacgagtccatgtgtacatgaaacacatggaggtcagaggacaac 187
Query: 305 tgaaactattatgctctggaatcctgcccagctcctttgagacagacccttttattggca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tgaaactattatgctctggaatcctgcccagctcctttgagacagacccttttattggca 127
Query: 365 cagagctcatccactgggctaggccagctgctcagggagctccaggaatcctcccatctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 cagagctcatccactgggctaggccagctgctcagggagctccaggaatcctcccatctc 67
Query: 425 tgcctccctagagctgtaattacaagtatggacaattacaagtatgggttctgagattaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tgcctccctagagctgtaattacaagtatggacaattacaagtatgggttctgagattaa 7
Query: 485 aactca 490
||||||
Sbjct: 6 aactca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_k16.g1 MSMg01no237_k16.g1 CHROMAT_FILE:
MSMg01no237_k16.g1 PHD_FILE: MSMg01no237_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:33 2005
(675 letters)
>mm_chr4_10258477_10259550
Length = 1074
Score = 1168 bits (604), Expect = 0.0
Identities = 650/675 (96%), Gaps = 16/675 (2%)
Strand = Plus / Plus
Query: 1 aatacttagcactgcaaaaaacaaaattaacaattaatggtaattttacctaaaagaaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aatacttagcactgcaaaaaacaaaattaacaattaatggtaattttagataaaagaaaa 260
Query: 61 tagagattgccacttttagttctgtaattagaagcaaataataccagctgaaaagtaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagagattgccacttttagttctgtaattagaagcaaataataccagctgaaaagtaagt 320
Query: 121 gtatggagaaactagaaacattggaaatagcagatgtgtaaataatattcttggggtttt 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 gtatggagaaactagaaacattggaaatagcagatgtgtaaataatatacttggggtttt 380
Query: 181 ttttaatctatttttagaaagcattgaattctaaacccaaaataataatagtgcattgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttaatctatttttagaaagcattgaattctaaacccaaaataataatagtgcattgtg 440
Query: 241 gtgtgacagaacaatagtaaaggatgacaaaggtcacagggctacatcatttcaaggtta 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 gtgtgacagaacaatagtaaaggatgacaaaggtcacagggctacatcatttca-ggtta 499
Query: 301 tgacaacttagattaggcaggtctacttcgatttaatgtagactattaaatgcacagttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 500 tgacaacttagattaggcaggtctacttcgatttaatgtagactattaaatgcactgttc 559
Query: 361 atgtttaatactacctggatgaaacaggcaagtattcacataatccaatgagttatccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgtttaatactacctggatgaaacaggcaagtattcacataatccaatgagttatccct 619
Query: 421 agatggataataagggaggttaaataatactaaaatatgtttggttattctgaaagaagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agatggataataagggaggttaaataatactaaaatatgtttggttattctgaaagaagg 679
Query: 481 caagaaaggacggtccaagaaatgaagaataagtgaggcaaataacaaaatgatggaatt 540
||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 680 caagaaa---------------tgaagaataagtgagacaaataacaaaatgatggaatt 724
Query: 541 accccaatcttgtgtatactcattcatatgtactttcacacacatgtatgcacatgcgtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 accccaatcttgtgtatactcattcatatgtactttcacacacatgtatgcacatgcgtg 784
Query: 601 cacatgcatgctcctcgcagaaataaataaaanatcttgagatgggtcatcatggatcag 660
||| |||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 785 cacgtgcatgctccacgcagaaataaataaaaaatcttgagatgggtcatcacggatcag 844
Query: 661 catggagcataaatc 675
|||||||||||||||
Sbjct: 845 catggagcataaatc 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1074
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1064
Effective search space: 707560
Effective search space used: 707560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
