Query= MSMg01no237_o19.b1 MSMg01no237_o19.b1 CHROMAT_FILE:
MSMg01no237_o19.b1 PHD_FILE: MSMg01no237_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:52 2005
(538 letters)
>mm_chr4_100359156_100360082
Length = 927
Score = 890 bits (460), Expect = 0.0
Identities = 515/538 (95%), Gaps = 11/538 (2%)
Strand = Plus / Plus
Query: 1 cagacaaaatttccctgcatggtatttgaggatgattctttaagtgtgactgttgctggc 60
||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct: 201 cagacaaaatttccctgcatggtatttgaggatcattctttaagtgt---tgt---tggc 254
Query: 61 ctagaataggacataggcatgcacttctccattttaggacaagaaaaacaagtgttgtgt 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 255 ctagaataggacgtaggcatgcacttctccattttaggacaagaaaaacaagtgctgtgt 314
Query: 121 tttcacaaaagaattcatcttcttcagtttctgcagctaattaaaatgttttggttcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tttcacaaaagaattcatcttcttcagtttctgcagctaattaaaatgttttggttcaaa 374
Query: 181 gagaaggaatagaccagatttctgggtctatgttatccaaagggcggtgtcagcttagaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tagaaggaatagaccagatttctgggtctatgttatccaaagggcggtgtcagcttagaa 434
Query: 241 gatccatcatctctgctccttctgtccagttccactggcatgaggcaagtatccaaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gatccatcatctctgctccttctgtccagttccactggcatgaggcaagtatccaaaaga 494
Query: 301 gtgagtgcaacttaattaagatggatctcagcagtcattatgtatggtcacacattcaaa 360
||||||||||||||| ||||||||||||||||| ||| ||||||| | |||||||||
Sbjct: 495 gtgagtgcaacttaa----gatggatctcagcagtcgttacgtatggttatacattcaaa 550
Query: 361 catacagaaataggaacgattagccaaacggtgctcttggaggtggcaaatgttaagtgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 551 catacagaaataggaacgattagccaaacggtgctcttggaggtggcaaat-tgaagtgg 609
Query: 421 gaaacatagttccttaccttgagttatggcagacatcactaaacaattacagagcccaaa 480
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 610 gaaacgtagttcctcaccttgagttatggcagacatcactaaacaattactgagcccaaa 669
Query: 481 tgtgtcctaagatatttcctacacaattcccccagcaaccattaccaagtcattagag 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tgtgtcctaagatatttcctacacaattcccccagcaaccattaccaagtcattagag 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 927
Length adjustment: 10
Effective length of query: 528
Effective length of database: 917
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_o19.g1 MSMg01no237_o19.g1 CHROMAT_FILE:
MSMg01no237_o19.g1 PHD_FILE: MSMg01no237_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:52 2005
(122 letters)
>mm_chr4_100471305_100471826
Length = 522
Score = 213 bits (110), Expect = 3e-60
Identities = 119/122 (97%)
Strand = Plus / Minus
Query: 1 ctcccttctttgacaatgatttgtcatgtgtccctaaagtaacccttctttccacgtatt 60
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 322 ctcccttctttgacaatgatttgtcatgtgtccctaaagtagcccatctttccacgtatt 263
Query: 61 atttgaatgagatttctttcaaataggggtgggggtggggaatgaagaagagtgatgatt 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 262 atttgaatgagatttctttcaaataggggtgggggtggggaatgaaggagagtgatgatt 203
Query: 121 ag 122
||
Sbjct: 202 ag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 522
Length adjustment: 8
Effective length of query: 114
Effective length of database: 514
Effective search space: 58596
Effective search space used: 58596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
