BAC Information

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BAC

Clone NameMSMg01-237O23
Chromosome4 (Build37)
Map Location 135,929,234 - 135,929,739
singlet/doubletsinglet
Overlap genenone
Upstream geneA330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr
Downstream geneHtr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237O23.T7 (MSMg01no237_o23.b1)MSMg01-237O23.TJ (MSMg01no237_o23.g1)
ACCAG402740AG402741
length726742
length of high quality
(start - end)
510 (36 - 545)236 (129 - 364)
definitionCHROMAT_FILE: MSMg01no237_o23.b1 PHD_FILE: MSMg01no237_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:53 2005CHROMAT_FILE: MSMg01no237_o23.g1 PHD_FILE: MSMg01no237_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAGC
ATCTTCTCTTTGAAATCCTCTTTAGAGGACTTATGACATTTCTCAAACAT
GATAGGTCGCAGGCCCTTCACCTCTGGCCTTGGTCCTGCCAACATTGAAA
GGCTTCATGTTCTCAGAAGACTCAGTCTCAGCAGGCTGTGGTCCCATCCA
GGATGGCTGATGGGTTTGGCGCTCATTGTTGATAGAGGAAAGCCCACTGT
CTTTGGCCAGACAAAATCGTTGATAACTGGTCACTGTCCCCACCCTCCAC
CTCCTGATGTGGTCTCCCCCACTTGCTATGAGTTTTCTGGAAGCCATTAT
TGCTCCTTCCCACGTGGATTAAGGAACAATGTCAGCTTCCAAAGCTGAGC
ATGTTGCCATGGGAACCTAAAGTTATTTGGAGTCGCAGAGCAATAGTAAG
CAATCATTGACACAACCTGAAACGCGCCATAATTGTCCCCCAAGAATAAT
AGGTGGAATATTTTATCCTTAGGTTGGGGGAACTTTTGTGCTTTGTCCTG
GGGATGGCGAGGAGCTGCTGAGGTCTGGAGGCTGGGAGAGATCTCCTGGC
TTTCCTGTGTCATCCTGATGCTGGAGTCCCTTACATACTTTCTTCTCTCT
CAGCTGCGCTTTCTCCCGTGTACAGTGGGGCACCCGTCTAGAGCTGACAT
GCACGTGTTAGAATTCGTGTGAGCCT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAATTCCTTATCAAATTATGCAATT
AGGACATAAGCTAGTATGTTTGTCGCAGCAATGGCTCAGCAGTTAGGAAT
CTTAGCTGCTCTTCTAAAGGATCAGAGTATGGCTACCAGTTCTGATAATG
GAAAACAAAACTGACTAACTCCAGCTCTAGGGGATTCCCATACCCTCCTC
TGGCCCCCAAGATCACCTGTACACATGTTGCAACACTGACACATTAAAAA
ATAAAATAATTTCTTAAAGATATAATCTTTTAAACTAACAACAACAACAA
AAACATGGCAAGTATTATATTTGCCCCCACCACCAAGAGGGGAGAGCCAG
CAAGGTGAGTAAATGGGTAAAGGTGCGAGAATGAATGTCAAGCTTGGTGA
CCTGAATTAGGTCTCAGAGGCCCACATAAAGCTGGAAAAGAAAGCCAACT
CCACAACTACATAAAGTTGTCCTCTGACCTCATCACACAAGCATACAGAA
CACACACAGTAAATAGTTGGTTTTTTTGTTTGTTTGTTGTTTGAGAGAGA
GAACAAAATGGCTCAGTGGATACAGGCACTTACTGCTAAGCCTGACAACC
TGAGTTTTATCCCCAGGAGTCAAAGGGAGAAATATACCCAAGTTGTTCTC
TGGCCTCCAAACATATACTGTGGTGTGCAAACACATACACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_o23.b1 MSMg01no237_o23.b1 CHROMAT_FILE:
MSMg01no237_o23.b1 PHD_FILE: MSMg01no237_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:53 2005
         (510 letters)



>mm_chr4_135929030_135929939
          Length = 910

 Score =  932 bits (482), Expect = 0.0
 Identities = 500/506 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagcatcttctctttgaaatcctctttagaggacttatgacatttctcaaaca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagcatcttttctttgaaatcctctttagaggacttatgacatttctcaaaca 264

                                                                       
Query: 65  tgataggtcgcaggcccttcacctctggccttggtcctgccaacattgaaaggcttcatg 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgataggtcgcagggccttcacctctggccttggtcctgccaacattgaaaggcttcatg 324

                                                                       
Query: 125 ttctcagaagactcagtctcagcaggctgtggtcccatccaggatggctgatgggtttgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctcagaagactcagtctcagcaggctgtggtcccatccaggatggctgatgggtttgg 384

                                                                       
Query: 185 cgctcattgttgatagaggaaagcccactgtctttggccagacaaaatcgttgataactg 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cgctcattgttgatggaggaaagcccactgtctttggccagacaaaatcgttgataactg 444

                                                                       
Query: 245 gtcactgtccccaccctccacctcctgatgtggtctcccccacttgctatgagttttctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtcactgtccccaccctccacctcctgatgtggtctcccccacttgctatgagttttctg 504

                                                                       
Query: 305 gaagccattattgctccttcccacgtggattaaggaacaatgtcagcttccaaagctgag 364
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 505 gaagccattattgctccttcccacgtggattagggaacaatgtcagcttccaaagctgaa 564

                                                                       
Query: 365 catgttgccatgggaacctaaagttatttggagtcgcagagcaatagtaagcaatcattg 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catgttgctatgggaacctaaagttatttggagtcgcagagcaatagtaagcaatcattg 624

                                                                       
Query: 425 acacaacctgaaacgcgccataattgtcccccaagaataataggtggaatattttatcct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacaacctgaaacgcgccataattgtcccccaagaataataggtggaatattttatcct 684

                                     
Query: 485 taggttgggggaacttttgtgctttg 510
           ||||||||||||||||||||||||||
Sbjct: 685 taggttgggggaacttttgtgctttg 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)