BAC Information

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BAC

Clone NameMSMg01-260E14
Chromosome4 (Build37)
Map Location 5,587,129 - 5,587,510
singlet/doubletsinglet
Overlap gene1700012H17Rik
Upstream geneImpad1, LOC100039338
Downstream geneLOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260E14.T7 (MSMg01no260_e14.b1)MSMg01-260E14.TJ (MSMg01no260_e14.g1)
ACCAG402992AG402993
length754755
length of high quality
(start - end)		638 (52 - 689)384 (76 - 459)
definitionCHROMAT_FILE: MSMg01no260_e14.b1 PHD_FILE: MSMg01no260_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:20 2005CHROMAT_FILE: MSMg01no260_e14.g1 PHD_FILE: MSMg01no260_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACAACAGATCACTCTCAACTGGCCAAGAAGCACTTAAAG
AAATGTTCAAAGTCCTTAGTCATTATGGAAATGCAAATCAAAAGAACTGT
GGGATTCCATGTTACACCAATCAGGATAGCTAAGATCAAAAACTCAGGTG
ACAGCACATGTTGGTGAGGATGTGGAGAAAGAGAAACACTCCTCCATTGC
TGATGTGATTGCAAATTGGTACAACCATTCAGAAAATCAATTTGGTGGTT
CCTCAGAAACATGGAAAACACTGAAGACCCAGCTATACGACTCTTGGGCA
TATATCCAAAAGGTGCCCCACCATACCACAGGGGGATGTGCTCCACTATG
TTCATAGAGGCCTTTTCTGTGACACCCAGAAGCTGGAAACAATGGAAGAT
GTCCCACAATGGAAGACTGGATAAAGAAAATGTGGTTCATTTACACAATG
GAATACTATTCAGCTATTAAGAAAAAGGACATCATGAGTTTTTCAGGCAA
ATGGATGCAATTGGAAAATATCATCCTGAGTGAGGTAACTCAGACCCAAA
AGAAGACGCATGGTATATACTCACTGTTAAGAAGATACTAGCCAAAAAAG
TACAGAATACCTAGGATGCAATCCATGGCATTCAAGAAGATTAACAAGCA
GAATGGCCCAAGTGAAAGATGCCTCAGCATCACTTGTAGGGAGAAAGAAG
CACT

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTCATAGTCTTCCCAGTTCCCTGT
CTGCCTGGCTGCTAGAGCTCAGTATCTAAGAATCAGAATGTTTCATGGGG
AGAAATGGCTCCAGAAAACCCTAGGGGAAAACAGCAGTTGGAGATTATCA
AGGAAAACTGCCTAGTCCTGTGCTAGCAAATGCTGAAAGTAGAAAAACCT
GCAGGAGAAATCAGATAAGCAAGAAAGAAGTCACGAGTTGGACCACACAT
CACGCTTATGTGAGAGGGCAGAGCTGCTTTCACCTGGAAGAGAATGCAAC
TTGCGGAGGATGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTTTCTCTCTCTCTCTTTTTTTCTCGCTCTCTCTTTGCCTCCTT
TTCTCCCTTGTCCCTTCCCTGTTTTGTGTGTCTCTCCCCTTCCTCCCTTG
CCCACGTCTTTCCCTTCTTTCCTTCTCTGTCCTCCCTTATTTCTTCCTTC
TTTTTTTCGCTTTCTTTTTATTACTCTTTCCTTTTGACTCCCTCTCTCTT
CTGTTTTCACCCCTTTTTTTTTTTTCCCTTCTGCTTATCCAATTTCCAAT
CCCCTCTCCCTCCCATATGTTTATTTTCTCTCATNTANTCCTTATCTCTT
TACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_e14.g1 MSMg01no260_e14.g1 CHROMAT_FILE:
MSMg01no260_e14.g1 PHD_FILE: MSMg01no260_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:20 2005
         (384 letters)



>mm_chr4_5587023_5587806
          Length = 784

 Score =  700 bits (362), Expect = 0.0
 Identities = 377/382 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatagtcttcccagttccctgtctgcctggctgctagagctcagtatctaagaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 attcatagtcttcccagttccctgtctgcctggctgctagagctcagtatctaagaatca 429

                                                                       
Query: 61  gaatgtttcatggggagaaatggctccagaaaaccctaggggaaaacagcagttggagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gaatgtttcatggggagaaatggctccagaaaaccctaggggaaaacagcagttggagat 369

                                                                       
Query: 121 tatcaaggaaaactgcctagtcctgtgctagcaaatgctgaaagtagaaaaacctgcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tatcaaggaaaactgcctagtcctgtgctagcaaatgctgaaagtagaaaaacctgcagg 309

                                                                       
Query: 181 agaaatcagataagcaagaaagaagtcacgagttggaccacacatcacgcttatgtgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agaaatcagataagcaagaaagaagtcacgagttggaccacacatcacgcttatgtgaga 249

                                                                       
Query: 241 gggcagagctgctttcacctggaagagaatgcaacttgcggaggatggtctctctctctc 300
           ||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||
Sbjct: 248 gggcagagctgctttcacctggaagagaatgcagcttgtggaggatggtgtctctctctc 189

                                                                       
Query: 301 tctctctctctctctctctctctctctctctctctctctctccccctctctctctctctc 360
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 188 tctctctctctctctctctctctctctctctctctctctctctctctctctctctctctc 129

                                 
Query: 361 tctctctctctctctctctctc 382
           ||||||||||||||||||||||
Sbjct: 128 tctctctctctctctctctctc 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 168
Number of extensions: 66
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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