BAC Information

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BAC

Clone NameMSMg01-260J17
Chromosome4 (Build37)
Map Location 138,368,129 - 138,498,396
singlet/doubletdoublet
Overlap genePla2g5, Pla2g2a, Pla2g2e, Otud3
Upstream geneEce1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d
Downstream geneRnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260J17.T7 (MSMg01no260_j17.b1)MSMg01-260J17.TJ (MSMg01no260_j17.g1)
ACCAG403225AG403226
length750754
length of high quality
(start - end)
316 (386 - 701)597 (76 - 672)
definitionCHROMAT_FILE: MSMg01no260_j17.b1 PHD_FILE: MSMg01no260_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:45 2005CHROMAT_FILE: MSMg01no260_j17.g1 PHD_FILE: MSMg01no260_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,498,081 - 138,498,396)(138,368,129 - 138,368,725)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCAGGATGGGGGCTGGTACCACCAGGACTTGGTGCCATCTGGGT
AAAGGGCTGTAGCAAGCAGGAGCCTCGGGTCTTTCCGACCCTGGCCAGGC
TGATCTTTGTCCCTGTCTCAGCCTAACAGTGGGATTCCAGGGCTCTCTAC
CTACCTGGCTAAGAGAAGGATTTTGACAGAGTTTCCCAGGATGCATGGAG
GCACAGGACAGAGATGCTGTTTGGGAGCTGGGACATGAGGACAGCAGACA
CTTTGCTGAGAATCGTCAGTCACTGGCTGTGCAGGGAGGCTCTGGTGTCC
CACCACAGAGACCCCTGTTCTGGGCTTCGCCTCCCAGGCAGCAGAGATGC
CACCTTGAAGATAAGTCTACGATGGCAGACCTGACCAGATTCTAGCTGAC
GACCGAAGGGCCCCTCCCTGAATCTTCCAGATGGCCCAAGTTCCCTCAGG
ACATTTGCACAACCCTGAAAAAAGGAGGGCCTAAAAAACATGGCCAAGGT
GGAATTTTCCAGAAGCCAGGGAGGTGGGGCTCACGACTGAGACGGAACAT
TTTCTGTCTGATGGTGAGGGAGCTCGGCACACACCCACTACATAAACACT
AACTTTGAGCCGCAGAATGTCTCCATCCTGTTGCCTTGAATTTGATCTGT
ATGGGCGGATTCCGTTTAATAGTTCATAAGAGTCTCACACTGCATTTTGG

GATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGTGTCATCGAGTCTACTCTCAGT
TCCAAGAACAGCTTCTCATGTCAAAAAGGGTCTCAGGAAATCCCCATGGG
ATGAGTTAAACATCTCGGAACTTATTTGCTGTCTGAGTGTAAGAGGAGCA
GGCTGGTGCCAAGGTTGAGGCAAGGATGCCTGGCCACTCCTGTTCCCAGA
ACCTAAGCTTTCACAATAACCCTAGCCTAGGACTAGGGTTTTATGACCCC
TGGGAGACATCTAGAAGAGTTCACCCGAAGAACTCTGGGAAAAATTTTGC
TTGGAGCCCTCCTCCTGCAGGACGTCTCCCAGGATTCCTCCTTCTGCAGG
GAGCTGCTCGGTCTCAGGAACATGCTGGATGTCACCTCAGACATCTGTCC
TCTGGGATGCTTCCTATCAGAGGGCTTCCTACATATGACGGTCCAGGAAG
AAAGGGGGAAGTTCAGGATTCGCTGAGCACCCACTAGGTCCAAGGCTACA
TCAGCATCCACAGACTTCTTAAACCCCTCAGAGTCCTGGGATGCCTGGTG
ATTCCGCTCTGTTTTAAGGAGATGAAAACTGAGGGACAGGTAGCCTATGG
AGGCCACACAACTTCTGAAAGGTTTCGGAGCAATCAGTCTGACCTGTCCC
CCCAAACACCCAGTGCTTTCCTCATAAGCAGATGAAGACTGCAAAGCTGA
GCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_j17.b1 MSMg01no260_j17.b1 CHROMAT_FILE:
MSMg01no260_j17.b1 PHD_FILE: MSMg01no260_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:45 2005
         (316 letters)



>mm_chr4_138497881_138498596
          Length = 716

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcagcagagatgccaccttgaagataagtctacgatggcagacctgaccagattctag 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 516 aggcagcagagatgccaccttgaagataagtctaggatggcagacctgaccagattctag 457

                                                                       
Query: 61  ctgacgaccgaagggcccctccctgaatcttccagatggcccaagttccctcaggacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctgacgaccgaagggcccctccctgaatcttccagatggcccaagttccctcaggacatt 397

                                                                       
Query: 121 tgcacaaccctgaaaaaaggagggcctaaaaaacatggccaaggtggaattttccagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgcacaaccctgaaaaaaggagggcctaaaaaacatggccaaggtggaattttccagaag 337

                                                                       
Query: 181 ccagggaggtggggctcacgactgagacggaacattttctgtctgatggtgagggagctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ccagggaggtggggctcacgactgagacggaacattttctgtctgatggtgagggagctc 277

                                                                       
Query: 241 ggcacacacccactacataaacactaactttgagccgcagaatgtctccatcctgttgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ggcacacacccactacataaacactaactttgagccgcagaatgtctccatcctgttgcc 217

                           
Query: 301 ttgaatttgatctgta 316
           ||||||||||||||||
Sbjct: 216 ttgaatttgatctgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no260_j17.g1 MSMg01no260_j17.g1 CHROMAT_FILE:
MSMg01no260_j17.g1 PHD_FILE: MSMg01no260_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:45 2005
         (597 letters)



>mm_chr4_138367929_138368925
          Length = 997

 Score = 1154 bits (597), Expect = 0.0
 Identities = 597/597 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgtcatcgagtctactctcagttccaagaacagcttctcatgtcaaaaagggtctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgtcatcgagtctactctcagttccaagaacagcttctcatgtcaaaaagggtctca 260

                                                                       
Query: 61  ggaaatccccatgggatgagttaaacatctcggaacttatttgctgtctgagtgtaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaatccccatgggatgagttaaacatctcggaacttatttgctgtctgagtgtaagag 320

                                                                       
Query: 121 gagcaggctggtgccaaggttgaggcaaggatgcctggccactcctgttcccagaaccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcaggctggtgccaaggttgaggcaaggatgcctggccactcctgttcccagaaccta 380

                                                                       
Query: 181 agctttcacaataaccctagcctaggactagggttttatgacccctgggagacatctaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctttcacaataaccctagcctaggactagggttttatgacccctgggagacatctaga 440

                                                                       
Query: 241 agagttcacccgaagaactctgggaaaaattttgcttggagccctcctcctgcaggacgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagttcacccgaagaactctgggaaaaattttgcttggagccctcctcctgcaggacgt 500

                                                                       
Query: 301 ctcccaggattcctccttctgcagggagctgctcggtctcaggaacatgctggatgtcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcccaggattcctccttctgcagggagctgctcggtctcaggaacatgctggatgtcac 560

                                                                       
Query: 361 ctcagacatctgtcctctgggatgcttcctatcagagggcttcctacatatgacggtcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcagacatctgtcctctgggatgcttcctatcagagggcttcctacatatgacggtcca 620

                                                                       
Query: 421 ggaagaaagggggaagttcaggattcgctgagcacccactaggtccaaggctacatcagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaagaaagggggaagttcaggattcgctgagcacccactaggtccaaggctacatcagc 680

                                                                       
Query: 481 atccacagacttcttaaacccctcagagtcctgggatgcctggtgattccgctctgtttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atccacagacttcttaaacccctcagagtcctgggatgcctggtgattccgctctgtttt 740

                                                                    
Query: 541 aaggagatgaaaactgagggacaggtagcctatggaggccacacaacttctgaaagg 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaggagatgaaaactgagggacaggtagcctatggaggccacacaacttctgaaagg 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)