Query= MSMg01no260_l23.b1 MSMg01no260_l23.b1 CHROMAT_FILE:
MSMg01no260_l23.b1 PHD_FILE: MSMg01no260_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:56 2005
(644 letters)
>mm_chr4_123275246_123276289
Length = 1044
Score = 1183 bits (612), Expect = 0.0
Identities = 633/640 (98%), Gaps = 2/640 (0%)
Strand = Plus / Plus
Query: 6 gaattcattcaatat-atccatattaaaatggtactattagaattatcacactatatcca 64
|||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatccaatataat-catattaaaatggtactattagaattatcacactatatcca 264
Query: 65 gaaaactttgatctaaagactaaatatattgcccaaagtcactacgttttggtgctgtgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaaactttgatctaaagactaaatatattgcccaaagtcactacgttttggtgctgtgt 324
Query: 125 aatttgatacacatatcagcattgcaggacccaagagataggttggataggtttcctgag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatttgatacacatatcagcattgcaggacccaagagataggttggataggtttcctgag 384
Query: 185 cacacagaagggcaagaagaagcccccatcaagagcctgctgctcctcatctgcatgagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacacagaagggcaagaagaagcccccatcaagagcctgctgctcctcatctgcatgagt 444
Query: 245 gaccagcagagcccagtgaagactctgtctttgccccactcccctcaaacacagcaccta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaccagcagagcccagtgaagactctgtctttgccccactcccctcaaacacagcaccta 504
Query: 305 cagatgctctgagatcttcccacagcagtttaaggggaagaaagaagaaaaaaagtaact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagatgctctgagatcttcccacagcagtttaaggggaagaaagaagaaaaaaagtaact 564
Query: 365 gaaagaaggccccacccaaaagcccttttcttttggcagacaaaaggccttggtagttcc 424
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaagaaggccctaatcaaaagcccttttcttttggcagacaaaaggccttggtagttcc 624
Query: 425 acagacagactagttattcttaacaccaaccaaatattctttggcacagaaagaaatatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acagacagactagttattcttaacaccaaccaaatattctttggcacagaaagaaatatg 684
Query: 485 aaaatgttaggcttgtgggagtggcctgtgttttatgcctttgcgaccttctcagtaaag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaatgttaggcttgtgggagtggcctgtgttttatgcctttgcgaccttctcagtaaag 744
Query: 545 ccagcccactagaaaataaacacagccttctgtccctgaccctgggcctttagttaactc 604
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 745 ccagcccactagaaaataaacacagccttctgtccctgaccctaggcctttagttaactc 804
Query: 605 tacgttccaaagagactgaatctctctctctctttttttt 644
||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tacgttccaaagagactgaatctctctctctctttttttt 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_l23.g1 MSMg01no260_l23.g1 CHROMAT_FILE:
MSMg01no260_l23.g1 PHD_FILE: MSMg01no260_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:56 2005
(315 letters)
>mm_chr4_123434747_123435463
Length = 717
Score = 559 bits (289), Expect = e-164
Identities = 311/319 (97%), Gaps = 5/319 (1%)
Strand = Plus / Minus
Query: 1 catctagggaccacattggggaaggagaaaattgactactgtaaactgtcctctaacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 catctagggaccacattggggaaggagaaaattgactactgtaaactgtcctctaacttt 591
Query: 61 aacatacctgctatgacatgaacatgcccactgacacacttacataaacaaatataaaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 590 aacatacctgctatgacatgaacatgcccactgacacacttacataaacaaatacaaaaa 531
Query: 121 -atataaatttaacgtaataaaccttttgaattgtattttatcaagtattcctcatttac 179
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 taaataaatttaacgtaataaaccttttgaattgtattttatcaagtattcctcatttac 471
Query: 180 ttcttttgttttacattgttactttctc-tgtattacattgttactttctctgtattgtt 238
||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct: 470 ttcttttgttttacattattactttc-catgtattacattgttactttctctgtattgtt 412
Query: 239 acgagttcatatgtgtgtatgatgtgtctgtaagcgatgatgcagtgcatac--cagtca 296
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 411 acgagttcatatgtgtgtatgatgtgtctgtaagcgatgatgcagtgcataccacagtca 352
Query: 297 tgtgcagaagtcagaggac 315
|||||||||||||||||||
Sbjct: 351 tgtgcagaagtcagaggac 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 717
Length adjustment: 9
Effective length of query: 306
Effective length of database: 708
Effective search space: 216648
Effective search space used: 216648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
