Query= MSMg01no260_o02.b1 MSMg01no260_o02.b1 CHROMAT_FILE:
MSMg01no260_o02.b1 PHD_FILE: MSMg01no260_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:07 2005
(316 letters)
>mm_chr4_122599255_122599970
Length = 716
Score = 561 bits (290), Expect = e-164
Identities = 308/314 (98%), Gaps = 1/314 (0%)
Strand = Plus / Plus
Query: 4 ggaattcacaggattctcacaacagtatagaatcccccc-atagggtttaggactggagg 62
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 203 ggaattcacaggattcttacaacagtatagaatcccccccatagggtttaggactggagg 262
Query: 63 ttacagctggtttgaagtgacctaagaggacagagagcttttcacattcataggtatgtc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttacagctggtttgaagtgacctaagaggacagagagcttttcacattcataggtatgtc 322
Query: 123 tgcatatgagtgtgtgtgtgtgtgtgtgtgtgtgtcctgtctctcccttgtcccttattc 182
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 323 tgcatatgagtgtgtgtttgtgtgtgtgtgtgtgtcctgtctctcccttgtcccttgttc 382
Query: 183 tgcgctccatttgttcccactcctgttggtagatgttccttgtgcttgccaacaatgagg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgcgctccatttgttcccactcctgttggtagatgttccttgtgcttgccaacaatgagg 442
Query: 243 gccaccactcattgtttagcatagccttgaagtctcacagcccacactcttttcaccaga 302
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 443 gccaccactcattgtttagcatagccttgaagtcacacagcccacactcttttcaccaga 502
Query: 303 tgatgagaaacact 316
||| ||||||||||
Sbjct: 503 tgaggagaaacact 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_o02.g1 MSMg01no260_o02.g1 CHROMAT_FILE:
MSMg01no260_o02.g1 PHD_FILE: MSMg01no260_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:07 2005
(283 letters)
>mm_chr4_122726029_122726711
Length = 683
Score = 511 bits (264), Expect = e-149
Identities = 279/284 (98%), Gaps = 2/284 (0%)
Strand = Plus / Minus
Query: 1 acacctttctttagaagctggttactagtctctggtgtgcatttcccctcagtggtcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 acacctttctttagaagctggttactagtctctggtgtgcatttcccctcagtggtcagg 424
Query: 61 tactcgtgaaattccttgaagccaattgactggaagataccgtgttgatagtcctggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tactcgtgaaattccttgaagccaattgactggaagataccgtgttgatagtcctggctg 364
Query: 121 ggaacaggagagtgtcagcagtaagccacagcctctggaagccagtggggccttggaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggaacaggagagtgtcagcagtaagccacagcctctggaagccagtggggccttggaggg 304
Query: 181 tgtcactgatgagtgagtgaggccctggacagttcctgactgagatccccccccaccccc 240
||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 303 tgtcactgatgagagagtgaggccctagacagttcctgactgagatccccccc-accccc 245
Query: 241 accccccatgccagcactggga-tgtctgaaagaaaagccactg 283
|||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 244 accccccacgccagcactgggaatgtctgaaagaaaagccactg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
