Query= MSMg01no261_b02.b1 MSMg01no261_b02.b1 CHROMAT_FILE:
MSMg01no261_b02.b1 PHD_FILE: MSMg01no261_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:22 2005
(409 letters)
>mm_chr4_13272443_13273251
Length = 809
Score = 731 bits (378), Expect = 0.0
Identities = 393/398 (98%), Gaps = 2/398 (0%)
Strand = Plus / Plus
Query: 13 ggaattcaaatttctatc-tttcaaaaaatttttcttttcgtttatgttatcacctttaa 71
|||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 213 ggaattcaaatttctatcattt-aaaaaatttttcttttcctttatgttatcacctttaa 271
Query: 72 ttttttatacattttaactagtgtgtgaattgtacaggatgatgagtttccttgtgacat 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttttttatacattttaactagtgtgtgaattgtacaggatgatgagtttccttgtgacat 331
Query: 132 ttacatgattcttcccaccctctacccatggttttaatgttatttatgagttcacatata 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttacatgattcttcccaccctctacccatggttttaatgttatttatgagttcacatata 391
Query: 192 aaatattctgtttctatggcagtttgtacatgtgtgtcattatacgttgttcttgtctgt 251
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aaatattgtgtttctatggtagtttgtacatgtgtgtcattatacgttgttcttgtctgt 451
Query: 252 cccactcctctgtggacactccaccctcctgccaccctctgctgctgcctttctttgcct 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cccactcctctgtggacactccaccctcctgccaccctctgctgctgcctttctttgcct 511
Query: 312 ctaataatcctctctccaaatctcacatcacattcccttcttatttcctgctctctcctt 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ctaataatcctctctccaaatctcacatcacattcccttcttatttcctgctctctcctt 571
Query: 372 ccttactgctttctccttcccatcacaatctctattaa 409
||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ccttactgctttctccttcccatcacaatctctattaa 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_b02.g1 MSMg01no261_b02.g1 CHROMAT_FILE:
MSMg01no261_b02.g1 PHD_FILE: MSMg01no261_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:22 2005
(523 letters)
>mm_chr4_13398786_13399709
Length = 924
Score = 969 bits (501), Expect = 0.0
Identities = 516/521 (99%), Gaps = 1/521 (0%)
Strand = Plus / Minus
Query: 1 cagagactctcgttaaatggcccatggaatgaatcaggcatggaattaacctatctttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cagagactctcgttaaatggcccatggaatgaatcaggcatggaattaacctatctttag 662
Query: 61 ttccctaaagcttatgttccatgaaggagtactcaaattgctttgtgcctacaccttgaa 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 661 ttccctaaagcttatgttccatgaaggagtactcagattgctttgtgcctacaccttgaa 602
Query: 121 ccatttggg-aaaaaattagttctttaaagaaactaagcccaaaattctaagcgaactga 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ccatttgggaaaaaaattagttctttaaagaaactaagcccaaaattctaagcgaactga 542
Query: 180 tccttaagtaactaaaaacaaggggaaaccagcagcaccagcaagtgttttaaacaacta 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cccttaagtaactaaaaacaaggggaaaccagcagcaccagcaagtgttttaaacaacta 482
Query: 240 ccaagtgagtgtctcctgcagctctgctcactgcgggtggctatggctgtgccctgggcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccaagtgagtgtctcctgcagctctgctcactgcgggtggctatggctgtgccctgggcc 422
Query: 300 ttggatgctagttgaaaggcagctgccctgcctcaggctggaagtcctctgcaggagagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttggatgctagttgaaaggcagctgccctgcctcaggctggaagtcctctgcaggagagc 362
Query: 360 ctgcagaaaaagaggtattttggtgcaaagaaggaataggtactgggttaataactccta 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 361 ctgcagaaaaagaggtattttggtgcaaagaaagaataggtactgggttaataactccta 302
Query: 420 ttttctcagagctctactgaaattcaaatagtcttttaattgcttagagttttgtccttt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttttctcagagctctactgaaattcaaatagtcttttaattgcttagagttttgtccttt 242
Query: 480 aaatgtggacattgaactggatttgatgaattttgttgcag 520
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 241 aaatgtggacactgaactggatttgatgaattttgttgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 924
Length adjustment: 10
Effective length of query: 513
Effective length of database: 914
Effective search space: 468882
Effective search space used: 468882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
