BAC Information

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BAC

Clone NameMSMg01-261D01
Chromosome4 (Build37)
Map Location 149,817,895 - 150,080,854
singlet/doubletdoublet
Overlap geneRere, Slc45a1
Upstream geneRbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091
Downstream geneLOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3, Camta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261D01.T7 (MSMg01no261_d01.b1)MSMg01-261D01.TJ (MSMg01no261_d01.g1)
ACCAG403647AG403648
length739754
length of high quality
(start - end)
420 (75 - 494)415 (75 - 489)
definitionCHROMAT_FILE: MSMg01no261_d01.b1 PHD_FILE: MSMg01no261_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:31 2005CHROMAT_FILE: MSMg01no261_d01.g1 PHD_FILE: MSMg01no261_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,080,435 - 150,080,854)(149,817,895 - 149,818,309)
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCGC
GGAATTCCAGGCACGAGTGACACACCAGACCCAGGAGAGACAGCTCAGGC
AAAAGCCTTTCAGAGAACACTGAGACCAGACTGAAGCAGAGCTTGGGCTC
AGCAGGGGGAGATGATGCAGTGGAGGTTCCGGCACACAGGTAGCCAGACC
CTGTGACTAGATCCACAGGTGCTGCTAGAGCTGTGGCAGGGATAACCCTG
CACAGAGAGTGATATTACTAAAGTGCCACCGCAGGGTCATCTCGATGGCA
CTTTGAACTTTGCCCTTGAAAGGACTGGTGTTTGGGAGCAGTCAGGAGAT
TCCATCACCGCTGCCAACAGGCTAGACCAGAGTGGTGCGGTGACTCCCGT
GCCAGCTTCCCTCCAGAGAGCCCCTTGACTGCAACCATGCTGAATTCTCA
CCCTAAGTGGCATGCTGCTATTGCCCCATCTTACAGGTGCAGAGACTGAG
GCTTATAGAGAGGAAGTCAGCACTCACTATGATGCTGTGTGCAAGTGGCT
GGGCCAGGATTCATACAGAATCCCTCACTGGTGCCCGCCACGCGCCCTCA
GTTGCGTTATCGTTTACTAGATTGGACTGAGATGTCCTGGTCATTTCTAT
CCAGGAGCCTCAGAGGACCGGTAGGTTGGCGATGAACGCAGCAGTGTATT
TGGGTTGTTCGGACCTTATGACCTTGTAACCATCCAACC
GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTAGTCATAGAGTCAGCCTCAGAGC
GCCCCAAAAGATTCTGGGAATGTGGGTTGATAACCAGCCGACTGAGTGAA
GTACAACCATGAACATATCATAGGTAGGAGAAAACCATTGTTCCGAGAGG
GCTGCGGGTATAAATTCTGTAATAGGGGGCTTGCCGAACAGGTCAGGCCC
TGGTTCTAAGTCTCTCCCAGTCCTGCCTCAAGAATTGCTGGTTTGCTTCT
ACTGACTTCCCCAACATTTAAAGTAAGTGTAATCTTTGTGCTTACTGTGA
AGGGCAATTTATAAGTTAATTTCAAATCAAACTTCAAAATTAAAAGAACC
CTCAGAACCAACATTAATTCAGTTAGGGTAGGCTGGTATTTATTTCTGAA
GTAAATAGTTGCCTGTGATAACTGGATGGCTTTAGCTCAAGCTGTTGGGA
GCACGTCCATGTCATGTGCCAACGACTCTGTCCCCACGCTGGGCTCTATT
GCTCTTTATTTTTACCACTGTGACTGCGTTATTTGCATGAAGTGATTTGG
CCTTTGTCTGGCAGTGTGCTGCCTGGCTGGTCCACCTGCCCTTGGCTAGT
ATTTTGCCTGGTTAATGCCGTGTAAACCTTTTAATTCTTCAAACTTTCTC
CCCCCCCCCCCCCCTCTTGTAATAAGCCCAGGTCCATCCCTATATATTCA
TCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_d01.b1 MSMg01no261_d01.b1 CHROMAT_FILE:
MSMg01no261_d01.b1 PHD_FILE: MSMg01no261_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:31 2005
         (420 letters)



>mm_chr4_150080235_150081054
          Length = 820

 Score =  797 bits (412), Expect = 0.0
 Identities = 418/420 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagacccaggagagacagctcaggcaaaagcctttcagagaacactgagaccagactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccagacccaggagagacagctcaggcaaaagcctttcagagaacactgagaccagactga 561

                                                                       
Query: 61  agcagagcttgggctcagcagggggagatgatgcagtggaggttccggcacacaggtagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agcagagcttgggctcagcagggggagatgatgcagtggaggttccggcacacaggtagc 501

                                                                       
Query: 121 cagaccctgtgactagatccacaggtgctgctagagctgtggcagggataaccctgcaca 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 500 cagaccctgtgactagatccacaggtgctgcgagagctgtggcagggataaccctgcaca 441

                                                                       
Query: 181 gagagtgatattactaaagtgccaccgcagggtcatctcgatggcactttgaactttgcc 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagagtgatattaccaaagtgccaccgcagggtcatctcgatggcactttgaactttgcc 381

                                                                       
Query: 241 cttgaaaggactggtgtttgggagcagtcaggagattccatcaccgctgccaacaggcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttgaaaggactggtgtttgggagcagtcaggagattccatcaccgctgccaacaggcta 321

                                                                       
Query: 301 gaccagagtggtgcggtgactcccgtgccagcttccctccagagagccccttgactgcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaccagagtggtgcggtgactcccgtgccagcttccctccagagagccccttgactgcaa 261

                                                                       
Query: 361 ccatgctgaattctcaccctaagtggcatgctgctattgccccatcttacaggtgcagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccatgctgaattctcaccctaagtggcatgctgctattgccccatcttacaggtgcagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no261_d01.g1 MSMg01no261_d01.g1 CHROMAT_FILE:
MSMg01no261_d01.g1 PHD_FILE: MSMg01no261_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:31 2005
         (415 letters)



>mm_chr4_149817695_149818509
          Length = 815

 Score =  803 bits (415), Expect = 0.0
 Identities = 415/415 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagtcatagagtcagcctcagagcgccccaaaagattctgggaatgtgggttgataac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagtcatagagtcagcctcagagcgccccaaaagattctgggaatgtgggttgataac 260

                                                                       
Query: 61  cagccgactgagtgaagtacaaccatgaacatatcataggtaggagaaaaccattgttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagccgactgagtgaagtacaaccatgaacatatcataggtaggagaaaaccattgttcc 320

                                                                       
Query: 121 gagagggctgcgggtataaattctgtaatagggggcttgccgaacaggtcaggccctggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagggctgcgggtataaattctgtaatagggggcttgccgaacaggtcaggccctggt 380

                                                                       
Query: 181 tctaagtctctcccagtcctgcctcaagaattgctggtttgcttctactgacttccccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctaagtctctcccagtcctgcctcaagaattgctggtttgcttctactgacttccccaa 440

                                                                       
Query: 241 catttaaagtaagtgtaatctttgtgcttactgtgaagggcaatttataagttaatttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catttaaagtaagtgtaatctttgtgcttactgtgaagggcaatttataagttaatttca 500

                                                                       
Query: 301 aatcaaacttcaaaattaaaagaaccctcagaaccaacattaattcagttagggtaggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatcaaacttcaaaattaaaagaaccctcagaaccaacattaattcagttagggtaggct 560

                                                                  
Query: 361 ggtatttatttctgaagtaaatagttgcctgtgataactggatggctttagctca 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtatttatttctgaagtaaatagttgcctgtgataactggatggctttagctca 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)