CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAATCCGCGGAA
TTCACAATGGGTTCCAGAATTGTGTGAGTGCTCTGTGCTGTATACTTGCA
GCGTGAGGCCATGTGGGAAAGCAGTGAGGACTAAACATGGCCCCCTTGCT
CCTTCCTTCTAACCTGTTCTTCACAAGACAGTTAGCAGCTTAATAGTTAA
GAAGTCCCTCCCACCTACCTCATTGTCTTCCTCTCCATACTCTCTGATAT
CCCATTCTAATTCCTTGGCACACTGAGTTACTGAGACTCTGTGAGTTCTT
ATCTTTCAAAAACTGGGAAGATGCCCAGACCTACCAAAAATTTGCCTGTT
GTAATACCCTCTAAGATCTTAACATAGTCCTCATTTCTAGGAAGCCCACC
CTGATTCTAACTCTGTCTGCTGGGCTCTTTGGCTACCACAGTCATGTTCA
TTCCAGGCTTAAGACAAACTCTCCAAAGGCTGCCTGGGATTGTTCACTGT
AGTCTTTCCATACTTGCAGAGCAACTGGCAGGGCTGTTGGTCTTAAAAGA
AAACCTATTGAGTGATCTAATTAGTCTTTGGTTGCTAGAGTTCTGGGAAC
CATCTANAGAGCAGAACATTGTTCAAAAAGCTCTGCAGAGTGACCCTATT
TTCATTACCACTTGAATCTGGGAATGGCCCTGACCCTCTCTCCTCACTTT
ACCAGTAAAGGGACAGAGGGACAGN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGTCCTTTGACTATGGTTCAGTCACTT
TTAATGATAACGCTCTGTCTCTTGTGTAATTTTTCCTGATTGGATTCTTG
CTTATTCCTCATGTACTGGCTGAAGTAAGATATAGTTTCTGCACTTCGAG
AATCAGGAAAATATGAACTGTTCAGGTCCACTCCACACTCATTTCCTGAA
GACCTTTGCAGTCATCCAGTCAATTAAACACTCCTTGCTAGCTACCACAT
GCCACATACCAGACAATCTCAAAACATTGCAGTGTATGTCCCCTCAAGAA
CATAAAACAAGTTAATAAAACAAAACTGTGGTGGTTTGAATGCGCTTGGG
CCATGGGCAATTATTAGCAGGTGTGGCCTCTTTGGAGGAAGTGTGTCCCT
ATTTAGGTGTGCTTTGATGGTTCCTAGTGCTCAAGCTCTGTCCAGTATAG
AAGACGTAGTCTCTTCCTGGCAGCCTTCGTTCAAGATGTAGAACTCTCAG
CTCCTTTTCTAGCACCATATCTGCCTGGACACTGCCATGTTTCCCACCAT
GATGATGGTGGACTGAACCTCTGAAACTGTAAGTCAGCCCCAATGAAACG
CTGTCCTTTATAAAAGTTGCCTTGGTCATGTTGTCTCTTCCAACAATGAA
ACCAAAN

Query= MSMg01no261_d13.b1 MSMg01no261_d13.b1 CHROMAT_FILE:
MSMg01no261_d13.b1 PHD_FILE: MSMg01no261_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:33 2005
         (525 letters)



>mm_chr4_99118044_99118968
          Length = 925

 Score =  969 bits (501), Expect = 0.0
 Identities = 519/525 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgagtgctctgtgctgtatacttgcagcgtgaggccatgtgggaaagcagtgaggact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 725 tgtgagtgctctgtgctgtatacttgcagcgtgaggccatgtgggaaagtagtgaggact 666

                                                                       
Query: 61  aaacatggcccccttgctccttccttctaacctgttcttcacaagacagttagcagctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aaacatggcccccttgctccttccttctaacctgttcttcacaagacagttagcagctta 606

                                                                       
Query: 121 atagttaagaagtccctcccacctacctcattgtcttcctctccatactctctgatatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 atagttaagaagtccctcccacctacctcattgtcttcctctccatactctctgatatcc 546

                                                                       
Query: 181 cattctaattccttggcacactgagttactgagactctgtgagttcttatctttcaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 545 cattctaattccttggcacactgagttactgagactctgtgagttcttatctttccaaaa 486

                                                                       
Query: 241 ctgggaagatgcccagacctaccaaaaatttgcctgttgtaataccctctaagatcttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctgggaagatgcccagacctaccaaaaatttgcctgttgtaataccctctaagatcttaa 426

                                                                       
Query: 301 catagtcctcatttctaggaagcccaccctgattctaactctgtctgctgggctctttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 catagtcctcatttctaggaagcccaccctgattctaactctgtctgctgggctctttgg 366

                                                                       
Query: 361 ctaccacagtcatgttcattccaggcttaagacaaactctccaaaggctgcctgggattg 420
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 365 ctaccacagtcatgctcattccaggcttaagagaaactctccaaaggctgcctgggattg 306

                                                                       
Query: 421 ttcactgtagtctttccatacttgcagagcaactggcagggctgttggtcttaaaagaaa 480
           |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 305 ttcactgtagtctttccacacttgcagagcaactggcagggttgttggtcttaaaagaaa 246

                                                        
Query: 481 acctattgagtgatctaattagtctttggttgctagagttctggg 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acctattgagtgatctaattagtctttggttgctagagttctggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no261_d13.g1 MSMg01no261_d13.g1 CHROMAT_FILE:
MSMg01no261_d13.g1 PHD_FILE: MSMg01no261_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:34 2005
         (619 letters)



>mm_chr4_98992444_98993462
          Length = 1019

 Score = 1180 bits (610), Expect = 0.0
 Identities = 616/618 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtcctttgactatggttcagtcacttttaatgataacgctctgtctcttgtgtaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtcctttgactatggttcagtcacttttaatgataacgctctgtctcttgtgtaattt 260

                                                                       
Query: 61  ttcctgattggattcttgcttattcctcatgtactggctgaagtaagatatagtttctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcctgattggattcttgcttattcctcatgtactggctgaagtaagatatagtttctgc 320

                                                                       
Query: 121 acttcgagaatcaggaaaatatgaactgttcaggtccactccacactcatttcctgaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttcgagaatcaggaaaatatgaactgttcaggtccactccacactcatttcctgaaga 380

                                                                       
Query: 181 cctttgcagtcatccagtcaattaaacactccttgctagctaccacatgccacataccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttgcagtcatccagtcaattaaacactccttgctagctaccacatgccacataccag 440

                                                                       
Query: 241 acaatctcaaaacattgcagtgtatgtcccctcaagaacataaaacaagttaataaaaca 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 acaatctcaaaacattgcagtgtatgtcccctcaagaacatcaaacaagttaataaaaca 500

                                                                       
Query: 301 aaactgtggtggtttgaatgcgcttgggccatgggcaattattagcaggtgtggcctctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaactgtggtggtttgaatgcgcttgggccatgggcaattattagcaggtgtggcctctt 560

                                                                       
Query: 361 tggaggaagtgtgtccctatttaggtgtgctttgatggttcctagtgctcaagctctgtc 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggaggaagtgtgtccctatgtaggtgtgctttgatggttcctagtgctcaagctctgtc 620

                                                                       
Query: 421 cagtatagaagacgtagtctcttcctggcagccttcgttcaagatgtagaactctcagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtatagaagacgtagtctcttcctggcagccttcgttcaagatgtagaactctcagct 680

                                                                       
Query: 481 ccttttctagcaccatatctgcctggacactgccatgtttcccaccatgatgatggtgga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccttttctagcaccatatctgcctggacactgccatgtttcccaccatgatgatggtgga 740

                                                                       
Query: 541 ctgaacctctgaaactgtaagtcagccccaatgaaacgctgtcctttataaaagttgcct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgaacctctgaaactgtaagtcagccccaatgaaacgctgtcctttataaaagttgcct 800

                             
Query: 601 tggtcatgttgtctcttc 618
           ||||||||||||||||||
Sbjct: 801 tggtcatgttgtctcttc 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)