CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCTCTGCACACCATTTTTAATATAGGTATTTGGTTCTA
TGGAGTCTAACTTCTTGAGTTTTTTGTATATATTGAATATTAGCCTTCTA
TCGGATGTAGTAAAGATCTTTCCCCAAACTGTTGGTTGCCATTTTGTTCT
GATGAGAGTGTCCTTTGCCTTACAGAAGCTTTTCTTTTTCTTTTCTCTTA
TAAAAGCAAATATTTCATTGGGGCTGGCTTACAGTTTCAGAGTTTGAGTC
CATTTTCATCATAGCATGGTAGGCATGCAGGCAAACATAATGCTGAAAAA
GGAGGTGAGAGTTCTGCATCTTGACCAAATGCAGCCTGGAAGAGGCTGTC
TTACAGAAGCTTTTCAATTTTATGACATCCTATTTGTCTATAGTTAAAGA
AATCTGACCCTACCTCTCTGGGAGACTATCAACAAACTTTGAAAAAAAAT
TTCTTTCCAGGTGGCAGTCACTTATCAATAGATCCCCAGTTATGTGTTAG
ATCTAACTTCATCACCACCCTGTGTCTATGCTGAAGGCTTTTGGATGGTA
CCACTCTGTAAGTTGTTATGTACAACCCCTTCTCTCACATACTTTTAAAG
TCAAGTTAGAATGTTTGTCCTTTCCTTATACTGAACATATTAAAAATCCC
TTTCTTGGAATCTATTGTGAAGGACCTTACTAA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGATAAGGATCCACTGGATCTGGAA
TCGTAAGTGTTTGAATTATCTGAGGTAGATGCTGGGAATCCATCTCTGGT
CCTTTGTAAGAGTAACATATGCTCTTTGGCTGGGTTGGCTGTCTCCTCAA
AGTCAGTAGAGGACACACTCAGACATCAAATTTTCAGCACAAAGGAGATT
TGTTACTGCAGAGGGACAGAGGCAAACGGGAGAGGGTGGCTGCCTTTGGA
CTGAACAAAGCCAGACAGGAAATAGCAGACAGCAGCAGACAGCAGCAGAC
AGCAGGAGAAAGCAGCAGAAAGCAGACAGCAGACAGCAGACAGCAGACAG
CAGACAGCAGACAGCAGACAGCAGACAGGAGACAGCAACAGAGTATGTCT
CCCCACCCCCAACCCAGCTAGGCGTGGGCTTTTAAGGATGAATAGGTAGA
GTCTGTGCTACAGTGAGTTAGTAAGCCCTGATTGGATATATCAGCGAAAT
GAAATTATTTTCATTGTTATACCTTGGTGTTTTGTCTCAGATATGAGTCA
GTGGCCAAATAAGGGAATGAACCTTAGAGGTTAGCTTTAGAAATGTAATC
TAAAGGTGAGCAAGAAAAGAGAGAAGGGTAAAGGACAAAACATGTATGTG
CCATGTTTGTCCAGCCCTGAATT

Query= MSMg01no261_j12.g1 MSMg01no261_j12.g1 CHROMAT_FILE:
MSMg01no261_j12.g1 PHD_FILE: MSMg01no261_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:01 2005
         (503 letters)



>mm_chr4_29198821_29199723
          Length = 903

 Score =  903 bits (467), Expect = 0.0
 Identities = 498/517 (96%), Gaps = 14/517 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggataaggatccactggatctggaatcgtaagtgtttgaattatctgaggtagatgctg 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 187 aggataaggatccactggatctggaatcataagtgtttgaattatctgaggtagatgctg 246

                                                                       
Query: 61  ggaatccatctctggtcctttgtaagagtaacatatgctctttggctgggttggctgtct 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ggaattcatctctggtcctttgtaagagtaacatatgctctttggctgggttggctgtct 306

                                                                       
Query: 121 cctcaaagtcagtagaggacacactcagacatcaaattttcagcacaaaggagatttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cctcaaagtcagtagaggacacactcagacatcaaattttcagcacaaaggagatttgtt 366

                                                                       
Query: 181 actgcagagggacagaggcaaacgggagagggtggctgcctttggactgaacaaagccag 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 367 actgcagagggacagaggcaaacgggagggggtggctgcctttggactgaacaaagccag 426

                                                                       
Query: 241 acaggaaatagcagacagcagcagacagcagcagacagcaggagaaagcagcagaaagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 acaggaaatagcagacagcagcagacagcagcagacagcaggagaaagcagcagaaagca 486

                                                                       
Query: 301 gacagcagacagcagacagcagacagcagacagcagacagcagacagcagacag------ 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 487 gacagcagacagcagacagcagacagcagacagcagacagcagacagcagacagcagaca 546

                                                                       
Query: 355 --------gagacagcaacagagtatgtctccccacccccaacccagctaggcgtgggct 406
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gcagacaggagacagcaacagagtatgtctccccacccccaacccagctaggcgtgggct 606

                                                                       
Query: 407 tttaaggatgaataggtagagtctgtgctacagtgagttagtaagccctgattggatata 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tttaaggatgaataggtagagtctgtgctacagtgagttagtaagccctgattggatata 666

                                                
Query: 467 tcagcgaaatgaaattattttcattgttataccttgg 503
           ||||| |||||||||| ||||||||||||||||||||
Sbjct: 667 tcagccaaatgaaatttttttcattgttataccttgg 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)