Query= MSMg01no261_m14.b1 MSMg01no261_m14.b1 CHROMAT_FILE:
MSMg01no261_m14.b1 PHD_FILE: MSMg01no261_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:15 2005
(554 letters)
>mm_chr4_93269984_93270936
Length = 953
Score = 1006 bits (520), Expect = 0.0
Identities = 529/532 (99%), Gaps = 1/532 (0%)
Strand = Plus / Minus
Query: 23 gaaaacagacctagacaattacttaacaagaaaattgctataaagaaggactaagcaaga 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gaaaacagacctagacaattacttaacaagaaaattgctataaagaaggactaagcaaga 694
Query: 83 acatgtggaggctgcatagaattaggcaggtttaatagtaaaatcagctgtatgtgtttt 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 acatgtggaggctgcatagaattaggcaggtttaatagtaaaatcagctgtatgtgtttt 634
Query: 143 aaacccacaatttccttgtcttcaaagcatctccatgattgctccttttagacagctcag 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aaacccacaatttccttgtcttcaaagcatctccatgattgctccttttagacagctcag 574
Query: 203 acaatggaaggaaaaaaaatgtaaaaatgtagacttttgtggattctttcaaaagggaaa 262
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 acaatggaagg-aaaaaaatgtaaaaatgtagacttttgtggattctttcaaaagggaaa 515
Query: 263 agatacttggtaggagagtatgaagtttctcttttattttagaaaatacttatttttcta 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agatacttggtaggagagtatgaagtttctcttttattttagaaaatacttatttttcta 455
Query: 323 aacaccatcgaatgtcatgttggattagatttgagaatttgttataagatgtgttgggtt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aacaccatcgaatgtcatgttggattagatttgagaatttgttataagatgtgttgggtt 395
Query: 383 tagaaattattgcttataaaatagaatatagtcacagctttttctctagataaaactgat 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tagaaattattgcttataaaatagaatatagtcacagctttttctctagataaaactgat 335
Query: 443 gggaaaatactcaagtccaatcaacacttttcttagaataacaaatgtggagaatattta 502
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 334 gggaaaatactcaagtccaatcaacacttttctcagaataacaaatgtggagaatattta 275
Query: 503 attttacagatggccatgagcacaaaccagtatagtctctctctctatattc 554
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 274 attttacagatggccatgagcacaaaccagtatagtctctctctatatattc 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 953
Length adjustment: 10
Effective length of query: 544
Effective length of database: 943
Effective search space: 512992
Effective search space used: 512992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_m14.g1 MSMg01no261_m14.g1 CHROMAT_FILE:
MSMg01no261_m14.g1 PHD_FILE: MSMg01no261_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:15 2005
(431 letters)
>mm_chr4_93128138_93128972
Length = 835
Score = 708 bits (366), Expect = 0.0
Identities = 410/436 (94%), Gaps = 22/436 (5%)
Strand = Plus / Plus
Query: 1 cttctgggtcctcaactgaaaaggaagggcagctgggtgctttctctgcctttctgtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 cttctgggtcctcaactgaaaaggaagggcagctgggtgctttctctgcctttctgtgct 276
Query: 61 agcgagctttcaccccagcatctgaccccagcatctgactccagcatctgactcctgagt 120
||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct: 277 agcaag--ttcaccccagcatctgaccccagcatctgactcc-------------tgagt 321
Query: 121 cttcattgacaaaatcaacagttgaaattttgttaaaaaaaaaaacatatgtggtgggtc 180
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct: 322 cttcattgacaaaatcaacagttgaaattttgttaaaaaaaaaa-catatg-gatgggtc 379
Query: 181 aggttatgtgtaggaatatacatattttttccttaaatatatggactataggatagaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aggttatgtgtaggaatatacatattttttccttaaatatatggactataggatagaatt 439
Query: 241 tgtagggagaaaagggatgtgacaaatgtaatcccacagattttataaaagttaaaagaa 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggagggagaaaagggatgtgacaaatgtaatcccacagattttataaaagttaaaagaa 499
Query: 301 aaaaagtcttactgtatctttacaagaagacagttttata-----tttaatgtttataga 355
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 500 aaaaagtcttactgtatctttacaagaagacagttttaaacagtttttaatgtttataga 559
Query: 356 gggaatgttagtgctattaaaagagcaaaccaccacaagtcccaccccagtgatttacac 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gggaatgttagtgctattaaaagagcaaaccaccacaagtcccaccccagtgatttacac 619
Query: 416 atctgtttatgtgata 431
||||||||||||||||
Sbjct: 620 atctgtttatgtgata 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 835
Length adjustment: 9
Effective length of query: 422
Effective length of database: 826
Effective search space: 348572
Effective search space used: 348572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
