BAC Information

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BAC

Clone NameMSMg01-262A15
Chromosome4 (Build37)
Map Location 79,369,378 - 79,476,941
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040026, LOC100040036, LOC667922
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262A15.T7 (MSMg01no262_a15.b1)MSMg01-262A15.TJ (MSMg01no262_a15.g1)
ACCAG404256AG404257
length724732
length of high quality
(start - end)		479 (74 - 552)658 (75 - 732)
definitionCHROMAT_FILE: MSMg01no262_a15.b1 PHD_FILE: MSMg01no262_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:34 2005CHROMAT_FILE: MSMg01no262_a15.g1 PHD_FILE: MSMg01no262_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,476,489 - 79,476,941)(79,369,378 - 79,370,032)
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCG
CGGAATTCTGTAGAGAATACCACTGCTGATAATCATGTGAAGACCTAGCC
TACATAAAGGAAAATGGGTATGTGAGGCCAGATTAATATCTTGCATGTAG
AATGTTCTAAAATACATGGCAAATAAACAAACAATTGAGTTTTTCTAAGG
AAAAGAACTGTTATTAATGATGAAGAACAAATGACTATTAAGCATGAAAC
AGGTTTCAGTCAAACTGGCCATTAGAGGAAGATGATCTTAGATTACATCT
CACTGTGATCAGATGAGAATTGAACTCATAATAAACTAACACATGCTGGC
GATAACATTATGAGAAGAATACCCCAATACACTGATGATTGAAATGAAAT
GTAGTCCCGCAATGATGTCAATAAGTACTTTTCCCAAATCAAAATGAAGA
TCTTCCATATGACAAAGTTATACCACTTGAGTATTTAACAGAAGGTTATA
ACATCACTATGTTATAGACATAATTGTGTATCTATGTTTATTGAAGTTCA
GTATTATGGAACCAATCAAGGTGTCAAATATCAGAGTAATGTATAAAACA
ATGGATTTTTTATCATAATTTTTAATTTCAAAGAATGAATCCTAATTGGA
GGGCCATCAAATTAAGTGGCATTAAGAAATTCTTAAGCCCAAACAACTAT
CTGAATTGCCTTCCTCCTTATTTG

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTTATCTGACACATTGTGAATCACA
GGAGCAAAAAACAATTGATGCAAAACTCAGAGAGCTGAAGATAAAATAAT
GCATAAGTGAATCCCAGCAAACAACAAATCTTCCATATCTGGTCATGATG
AAATCAAAGAGAAATCACCACAAGGATGAGTACAAAGAAATATGCCATTC
TAATAACCTTTTCTAAGTATAAGGTACAACATGATCAAAACAGATGAAAA
AAGGCTGTCTTTAACTTTGGTGTTTAAAGTATCAAGCAACCAGTGATCAC
TCTAAGTAACATAACTATGCTCCAAACATTCTTAAATTACAGAGAAAGTA
ACAGAGATCACATCAATCTAACCATGATAGTCACAGAAGACATGTTTGTT
TCAAAGGCAATGAATATTGCTTAATCATATCAATATGGATATTAATTCTT
AATCAGATAGAAACATTTTTCCTAGGCCATGACTTGCTGAGAACTTTACA
TTCATGCGGTAGCTAGAGTAAACAAAATAAGTAACACATTAAACATTTTG
ATTGTCAATGAATTGGAAGAGAGGAAAAGGGTATACATATAATAGTTTCC
ATTTAAAAAGGTGAAAATGGGTAGTGATAATAATTGTATAACATTATGAA
GATATTTAATGCATGTGTTAAATTATTCAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_a15.b1 MSMg01no262_a15.b1 CHROMAT_FILE:
MSMg01no262_a15.b1 PHD_FILE: MSMg01no262_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:34 2005
         (479 letters)



>mm_chr4_79476489_79477367
          Length = 879

 Score =  760 bits (393), Expect = 0.0
 Identities = 438/453 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgataatcatgtgaagacctagcctacataaaggaaaatgggtatgtgaggccagat 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||
Sbjct: 453 tgctgataatcatgtgaagacctagcctacataaaggaaaatgtgtatgtgagggtagat 394

                                                                       
Query: 61  taatatcttgcatgtagaatgttctaaaatacatggcaaataaacaaacaattgagtttt 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 393 taatatcttgcatgtagaatgctctaaaatacatggcaaataaacaaacaattgagtttt 334

                                                                       
Query: 121 tctaaggaaaagaactgttattaatgatgaagaacaaatgactattaagcatgaaacagg 180
            |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 333 gctaaggaaaagagctgttattaatgatgaaggacaaatgactattaagcatgaaacagg 274

                                                                       
Query: 181 tttcagtcaaactggccattagaggaagatgatcttagattacatctcactgtgatcaga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 273 tttcagtcaaactggccattagaggaagatgatcttagattacatctcactgtgattaga 214

                                                                       
Query: 241 tgagaattgaactcataataaactaacacatgctggcgataacattatgagaagaatacc 300
           ||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 213 tgagaattgaacttagaataaactaacacatgctggcaataacattatgagaagaaaacc 154

                                                                       
Query: 301 ccaatacactgatgattgaaatgaaatgtagtcccgcaatgatgtcaataagtacttttc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 153 ccaatacactgatgattgaaatgaaatgtagtcccgcaatgatgtcaataagtagttttg 94

                                                                       
Query: 361 ccaaatcaaaatgaagatcttccatatgacaaagttataccacttgagtatttaacagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  ccaaatcaaaatgaagatcttccatatgacaaagttataccacttgagtatttaacagaa 34

                                            
Query: 421 ggttataacatcactatgttatagacataattg 453
           ||||||||||||||||||||||||| |||||||
Sbjct: 33  ggttataacatcactatgttatagagataattg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no262_a15.g1 MSMg01no262_a15.g1 CHROMAT_FILE:
MSMg01no262_a15.g1 PHD_FILE: MSMg01no262_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:34 2005
         (658 letters)



>mm_chr4_79369178_79370235
          Length = 1058

 Score = 1143 bits (591), Expect = 0.0
 Identities = 639/655 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttatctgacacattgtgaatcacaggagcaaaaaacaattgatgcaaaactcagagag 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttatctgacacattgtgaatctcaggagcaaaaaacaattgatgcaaaactcagagag 260

                                                                       
Query: 61  ctgaagataaaataatgcataagtgaatcccagcaaacaacaaatcttccatatctggtc 120
           |||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||
Sbjct: 261 ctgaagataaaataatgcataagtgaatcccagtgaacaacaaatcttccatatatggtc 320

                                                                       
Query: 121 atgatgaaatcaaagagaaatcaccacaaggatgagtacaaagaaatatgccattctaat 180
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 321 atgatgaaatcaaagagaaatcaccacaaggatgagtacaaagacatatgacattctaat 380

                                                                       
Query: 181 aaccttttctaagtataaggtacaacatgatcaaaacagatgaaaaaaggctgtctttaa 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacattttctaagtataaggtacaacatgatcaaaacagatgaaaaaaggctgtctttaa 440

                                                                       
Query: 241 ctttggtgtttaaagtatcaagcaaccagtgatcactctaagtaacataactatgctcca 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttggtgtttaaagtgtcaagcaaccagtgatcactctaagtaacataactatgctcca 500

                                                                       
Query: 301 aacattcttaaattacagagaaagtaacagagatcacatcaatctaaccatgatagtcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 aacattcttaaattacagagaaagtaacagagatcacatcaatctaaccataatagtcac 560

                                                                       
Query: 361 agaagacatgtttgtttcaaaggcaatgaatattgcttaatcatatcaatatggatatta 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaagacatgtttgttttaaaggcaatgaatattgcttaatcatatcaatatggatatta 620

                                                                       
Query: 421 attcttaatcagatagaaacatttttcctaggccatgacttgctgagaactttacattca 480
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 attcttaatcagatagaaacatttttcctatgccatgacttgctgagaactttacattca 680

                                                                       
Query: 481 tgcggtagctagagtaaacaaaataagtaacacattaaacattttgattgtcaatgaatt 540
           || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtggtagttagagtaaacaaaataagtaacacattaaacattttgattgtcaatgaatt 740

                                                                       
Query: 541 ggaagagaggaaaagggtatacatataatagtttccatttaaaaaggtgaaaatgggtag 600
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 741 ggaagagaggaaaagggtatacatataatagtttccatttaaaaagatgaaaataggtag 800

                                                                  
Query: 601 tgataataattgtataacattatgaagatatttaatgcatgtgttaaattattca 655
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 801 tgataataattgtataacattatgaaggtatttaatgcatgtgttaaattattca 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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