BAC Information

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BAC

Clone NameMSMg01-262C06
Chromosome4 (Build37)
Map Location 115,167,659 - 115,168,000
singlet/doubletsinglet
Overlap geneCyp4a14
Upstream geneLOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641
Downstream geneCyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262C06.T7 (MSMg01no262_c06.b1)MSMg01-262C06.TJ (MSMg01no262_c06.g1)
ACCAG404331AG404332
length735737
length of high quality
(start - end)
508 (43 - 550)344 (72 - 415)
definitionCHROMAT_FILE: MSMg01no262_c06.b1 PHD_FILE: MSMg01no262_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:42 2005CHROMAT_FILE: MSMg01no262_c06.g1 PHD_FILE: MSMg01no262_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTCTTTCTTGAGCCCCATTTTTTAATGGGGTTATTCAATTTTCT
GAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGTTTTAGAATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTAATTGACGGTGTCTTTTGCCTTGCAGAATCATAGGAGTTTCATTAG
GTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGT
TTAGGAATTTTTCCCCTGTGTCCATATCTTCAAGGTTTTTCCCCACTTTC
TCCTATATAATTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCA
CTTAGAGTTGACCCCACCACACGGAGATAGGAATGGATCAATTCACATTT
TTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTG
TCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACC
ATAATGTGTGGTTTCATTTCTGGGTCCTCAATTCTATTCCATTGGTCTAC
TTGTCTGTCTCTATTACTAGTTCCATGCAGTTTTTATCACCATTGCTCTG
TATTAAAGCTTTACGTCAGGTATGGTGATTCCACCTGAGGCTCCTTCACC
CTTGAGAAGATCTTTTGCAATCCTACGGTTTTTGN
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACGAAGATGTTCTTTGACATCAAGTACTT
TGTGTGGTATGGAAGATTCAGGACCACCACAGGGGCATAGCTCTGGCATG
TTCAAGAAAGGGTAGAAATTTGGGTTGGTTTGATAATCTGTCTTTTTTTT
ACTTCTATTCAGACCATTGCTGTGTCCCAGGACTTGTCCTGGCCAGATCC
TGGAGTCTTGTTAGATGAAACTAAAGCTCCTTAGAGAAGCTACTGTGGTA
AGAACTTCTGTGTTCTGTAGTAATTCTGAATTTTGCTCTTCTTAAATGTG
GCTAGCGTGTGAGCCCTCAGTGAGTGACTCTTCATGCAGACCCTTACAAA
ATTACATTATACCCCCCCCCAGTAGCATAGTCAGCCATTCTTACTGCTTA
CATACACTTGAGGATGGGAATGGTAAATGAATCCAGCCAGTTTCACCTGC
CCAAAGAACTTTCTTTATTGTAAGAGGCTTTCTTTCTAGATGGAACATTT
TACCTCTAGAAAGCCCTGTATTGTAATCAGACATTCCTCTTCACAATGGG
TAGTTCCAATCTCAGACGATATTGATTTTCTCCATACCATATCATCACTT
CTACTACTTCTCTCAGACACCACTCTTTATTACCCTGCCCCTCTGTATTT
TGACCCCCACTCTTTCCCCGCCCTTCCCCCTTCTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_c06.g1 MSMg01no262_c06.g1 CHROMAT_FILE:
MSMg01no262_c06.g1 PHD_FILE: MSMg01no262_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:42 2005
         (344 letters)



>mm_chr4_115167459_115168203
          Length = 745

 Score =  630 bits (326), Expect = 0.0
 Identities = 338/342 (98%), Gaps = 1/342 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgaagatgttctttgacatcaagtactttgtgtggtatggaagattcaggaccaccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 acgaagatgttctttgacatcaagtactttgtgtggtatggaagagtcaggaccaccaca 260

                                                                       
Query: 61  ggggcatagctctggcatgttcaagaaagggtagaaatttgggttggtttgataatctgt 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggcataactctggcatgttcaagaaagggtagaaatttgggttggtttgataatctgt 320

                                                                       
Query: 121 c-ttttttttacttctattcagaccattgctgtgtcccaggacttgtcctggccagatcc 179
           | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttttttttcttctattcagaccattgctgtgtcccaggacttgtcctggccagatcc 380

                                                                       
Query: 180 tggagtcttgttagatgaaactaaagctccttagagaagctactgtggtaagaacttctg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggagtcttgttagatgaaactaaagctccttagagaagctactgtggtaagaacttctg 440

                                                                       
Query: 240 tgttctgtagtaattctgaattttgctcttcttaaatgtggctagcgtgtgagccctcag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttctgtagtaattctgaattttgctcttcttaaatgtggctagcgtgtgagccctcag 500

                                                     
Query: 300 tgagtgactcttcatgcagacccttacaaaattacattatac 341
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagtgactcttcatgcagacccttacaaaattacattatac 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 745
Length adjustment: 9
Effective length of query: 335
Effective length of database: 736
Effective search space:   246560
Effective search space used:   246560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)