Query= MSMg01no262_m15.b1 MSMg01no262_m15.b1 CHROMAT_FILE:
MSMg01no262_m15.b1 PHD_FILE: MSMg01no262_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:31 2005
(555 letters)
>mm_chr4_127412799_127413754
Length = 956
Score = 746 bits (386), Expect = 0.0
Identities = 452/476 (94%), Gaps = 5/476 (1%)
Strand = Plus / Plus
Query: 5 gaattctcacgaggtc---ccccaagccatactgagaccacagaatttattatggatgac 61
|||||||||||||| | || |||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattctcacgaggacaaacc--aagccatactgagaccacagaatttattatgggtgac 262
Query: 62 atttttgggaagtgtcacctgatcgtattttcagtgattcataagagttagctttacaaa 121
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atttttgggaggtgtcaattgatcgtattttcagtgattcataagagttagctttacaaa 322
Query: 122 gtgccaagggaagaacatttagagagcagagttgcaggggaggctaggaatattggaaga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtgccaagggaagaacatttagagagcagagttgcaggggaggctaggaatattggaaga 382
Query: 182 gaagaaaggtctatgaggctgaataactgagtctgacaagggtgtggacatctgcataca 241
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 383 gaagaaaggtctatgaggctgaacaactgagtctgacaagggtgtggacatctgcgtaca 442
Query: 242 ttgcagatgcctgcttatggcttcatccttgccttgtctgctctgtaggccctcccttta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttgcagatgcctgcttatggcttcatccttgccttgtctgctctgtaggccctcccttta 502
Query: 302 gccctgtgccttctctgtagcccctccctttagccctgtgccttctctgtagcccctccc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gccctgtgccttctctgtagcccctccctttagccctgtgccttctctgtagcccctccc 562
Query: 362 tttaaccctgtactccctctataactcctccctttagccctgtgccttctctgtggcccc 421
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 563 tttaaccctgtactttctctataactcctccctttagccccgtgccttctctgtggcccc 622
Query: 422 tccctttaaacctgtgccttctctgtagcccctccctttagccctgtgccttctct 477
||||| ||| |||||||||||||| || |||| ||||| ||| |||||||||||
Sbjct: 623 tccctctaaccctgtgccttctctaaagtccctttctttaaccccgtgccttctct 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 956
Length adjustment: 10
Effective length of query: 545
Effective length of database: 946
Effective search space: 515570
Effective search space used: 515570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_m15.g1 MSMg01no262_m15.g1 CHROMAT_FILE:
MSMg01no262_m15.g1 PHD_FILE: MSMg01no262_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:31 2005
(540 letters)
>mm_chr4_127539166_127540106
Length = 941
Score = 1023 bits (529), Expect = 0.0
Identities = 538/541 (99%), Gaps = 1/541 (0%)
Strand = Plus / Minus
Query: 1 cacacttcccacattatcgagagtcaccaaggagggatttccttatccccattgaatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 cacacttcccacattatcgagagtcaccaaggagggatttccttatccccattgaatagt 778
Query: 61 tgagcaagctgaaatgtgaggttgggtgacttgctctgtgtgacccggttcatagatcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tgagcaagctgaaatgtgaggttgggtgacttgctctgtgtgacccggttcatagatcca 718
Query: 121 cgctagctctcagcgcttgggagtctgcctgggaggaggatgcctggtgatggttcacgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 cgctagctctcagcgcttgggagtctgcctgggaggaggatgcctggtgatggttcacgg 658
Query: 181 taaggagcacggctgttctcaaagtctatagttaggttctgtgggctgagagctccttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 taaggagcacggctgttctcaaagtctatagttaggttctgtgggctgagagctccttcc 598
Query: 241 tgacccaggcaaaattagtgtgctcactgagtagcattccctctgcggccccttacatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tgacccaggcaaaattagtgtgctcactgagtagcattccctctgcggccccttacatgg 538
Query: 301 tgatacctggtttcctttaggcaagggagtgagtctcttctgtcttctgtctctacatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tgatacctggtttcctttaggcaagggagtgagtctcttctgtcttctgtctctacatct 478
Query: 361 aggcctccctcacccctgtattattacaaaggtaaagcccgttcccccccc-ccccccac 419
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 477 atgcctccctcacccctgtattattacaaaggtaaagcccgttcccccccctccccccac 418
Query: 420 tacacatcttttctaaagcagcccctcctctcagcctccgggacaccctagacactccct 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 417 tacacatcttttctaaagcagcccctcctcccagcctccgggacaccctagacactccct 358
Query: 480 ctgaggagcctgatggctgcctggttgtatttgcttcctctaactctccagccactgcaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctgaggagcctgatggctgcctggttgtatttgcttcctctaactctccagccactgcaa 298
Query: 540 t 540
|
Sbjct: 297 t 297
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 941
Length adjustment: 10
Effective length of query: 530
Effective length of database: 931
Effective search space: 493430
Effective search space used: 493430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
