BAC Information

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BAC

Clone NameMSMg01-262N04
Chromosome4 (Build37)
Map Location 144,499,539 - 144,651,193
singlet/doubletdoublet
Overlap geneDhrs3, Vps13d
Upstream geneLOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844
Downstream geneTnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262N04.T7 (MSMg01no262_n04.b1)MSMg01-262N04.TJ (MSMg01no262_n04.g1)
ACCAG404818AG404819
length753731
length of high quality
(start - end)
147 (88 - 234)265 (72 - 336)
definitionCHROMAT_FILE: MSMg01no262_n04.b1 PHD_FILE: MSMg01no262_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:33 2005CHROMAT_FILE: MSMg01no262_n04.g1 PHD_FILE: MSMg01no262_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,651,048 - 144,651,193)(144,499,539 - 144,499,803)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCAAACAAGCGGAT
TCTGCTCTGGTCTTGCCTTGAAAACATGAAAGGAATAGCTGAAGGGTCAA
CAAGTATCCCAGGAAATGGACTGTGTTCCCTACAAACCTCGTAATGTATT
TGGGCGCAGACATGTGAAGCACCCAACAAGGCATAACTGACAGGCCAAAG
GTAGCCACCATGATGCATACAATATCGCTTTCATGAGGGACCCAGCGCTC
AGGAAGTTGTTAGAGCACACTAAAGTTGTTAACACAACCGGAGTGCTGTA
TGTTTCATAAGTTGAACACATACTTTTAAATAAAAACTGACCTCAAGAAA
TGAAAATTTTACTGGATGTCTATAACGCACAACGTGGATGGTACTCCAGT
TGACCTTCCATACCTGTAGGCTCCATATATGTGTTTATTATTTCCAGAGC
TTTCTCTATCTCATTGTTTTCCCAACTATATTTATTAACCATTCCCATAG
AACTAACATTGCCTGAGGAACCGTAAGCCATTTACCGACTATAAAATGTG
CCAAATGTTTTTTTGTAGCTGTTAACAAAAAACTATATCTGCTTTTTACA
TTCATCATTTCCTTAACATACTTTGGTATCTCTGAACCCTCTTCATTGGT
TGTTCTTGATATGTCCCATCGATATTAATTTTATCATTCACCCCTAGTCC
TACTTATGGCCTTAATTATTATTATTACCCCACAACCGACCCATTATTTT
TTN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCCCCAATCTGATGGGCTGCGTGCAGAGTTAGAGAAAAG
TACCTATATAGGACCACAAAGCATCTTTGGGGAGGACAGAGGAGGCATCT
GCAAATGGCAGGGTGGAGGATGAGACCCAGTGGTCTGGTGACTGAGCCCA
CAGGCTCCCTGGCCTCAATATCACAGGGTCTCTGTGCTCATCTATTGAAT
GGAGATAACAGGACTCACCTATGGTAGCTGCAAGAAGTAACCACACGCTG
AGTAACTTATAACGACAGGTCTTAGCCAGGTGTGGTAACGCAAGCTGAGG
CAGGTGGATTGCCTTGTTTAAGACCAGCCTGAGCTACAGATCTTGTCTCA
AGGATAAATATACCAAATAGGCACAACATACAGATTTAGCCTATTATAGT
TCTGGGGTCCACTGCCAATAGATTCCTCTCTTCATACCTTTTATTTCTAA
TGAGGACTTCCCAGGTATCACCTAGCCATATGTCTGGGTATTACATTATG
GAACCTATCGCATGATTGTTTCTCCTTGGCGGCCTCTATATGTGTCATGT
CTGCACATAAGGTTACCGTCCTGCAACTTGACTTGCATACATTGAAATTA
CCTCATTATGTCTCCTAGTTTACCTGTTTTTTCCTGGTCGTTATGCATCT
CATACTCGACCCCTTAACAAGTCTAATTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_n04.b1 MSMg01no262_n04.b1 CHROMAT_FILE:
MSMg01no262_n04.b1 PHD_FILE: MSMg01no262_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:33 2005
         (147 letters)



>mm_chr4_144650848_144651394
          Length = 547

 Score =  252 bits (130), Expect = 1e-71
 Identities = 142/146 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgaagggtcaacaagtatcccaggaaatggactgtgttccctacaaacctcgtaatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gctgaagggtcaacaagtatcccaggaaatggactgtgttccctacaaacctcgtaatgt 287

                                                                       
Query: 61  atttgggcgcagacatgtgaagcacccaacaaggcataactgacaggccaaaggtagcca 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 286 atttgggcgcagacatgtgaagcacccaacaaggcagaactgacaggccaaaggtagcca 227

                                     
Query: 121 ccatgatgcatacaatatcgctttca 146
           |||||||||| |||| | ||||||||
Sbjct: 226 ccatgatgcagacaagaacgctttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no262_n04.g1 MSMg01no262_n04.g1 CHROMAT_FILE:
MSMg01no262_n04.g1 PHD_FILE: MSMg01no262_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:33 2005
         (265 letters)



>mm_chr4_144499339_144500003
          Length = 665

 Score =  505 bits (261), Expect = e-147
 Identities = 264/265 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgggctgcgtgcagagttagagaaaagtacctatataggaccacaaagcatctttggg 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 gatgggctgcgtgcagagttagagaaaagttcctatataggaccacaaagcatctttggg 260

                                                                       
Query: 61  gaggacagaggaggcatctgcaaatggcagggtggaggatgagacccagtggtctggtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggacagaggaggcatctgcaaatggcagggtggaggatgagacccagtggtctggtga 320

                                                                       
Query: 121 ctgagcccacaggctccctggcctcaatatcacagggtctctgtgctcatctattgaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagcccacaggctccctggcctcaatatcacagggtctctgtgctcatctattgaatg 380

                                                                       
Query: 181 gagataacaggactcacctatggtagctgcaagaagtaaccacacgctgagtaacttata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagataacaggactcacctatggtagctgcaagaagtaaccacacgctgagtaacttata 440

                                    
Query: 241 acgacaggtcttagccaggtgtggt 265
           |||||||||||||||||||||||||
Sbjct: 441 acgacaggtcttagccaggtgtggt 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)