BAC Information

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BAC

Clone NameMSMg01-262N21
Chromosome4 (Build37)
Map Location 147,234,190 - 147,373,903
singlet/doubletdoublet
Overlap geneD4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb
Upstream geneLOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181
Downstream geneNppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262N21.T7 (MSMg01no262_n21.b1)MSMg01-262N21.TJ (MSMg01no262_n21.g1)
ACCAG404850AG404851
length759712
length of high quality
(start - end)		656 (65 - 720)530 (75 - 604)
definitionCHROMAT_FILE: MSMg01no262_n21.b1 PHD_FILE: MSMg01no262_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:37 2005CHROMAT_FILE: MSMg01no262_n21.g1 PHD_FILE: MSMg01no262_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,234,190 - 147,234,845)(147,373,374 - 147,373,903)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTC
TCTATACCAGAATGGCCTCAAACTCAGAAATTCACCTGCCTCTGCCTCCC
GAGTGCTGGGATTAACGGCGTGCGCCACCACCACTCCTGGGCATGTGTAC
ATAGCAAGGATCCTTACCCACTGAGCCATCTCCCCAGGCCTAAGATACTT
TGACACTGACCTTGGTTCTAGCCTGCTTTGGGGACCCATCGGTCTGGTAG
ACAGTCATCTATCTAGATCTGAGAGCTACAGTAAAAGCTATCGATCTGAG
TAGGGTCCAGTGGCACATGCCCATATTCCATACTCAAGAGGTAGATGCAG
AAGGATCAGAAGTTCAAGGACAGCCTTGGCTACATTGTGACTGCCAGGCT
AGCCTGGCCCCTGTGAGATCATACGGTAGAGAATACACAAAAAAGCCACA
CTCCCAGTGTGACCACCAGATTCCCAATGTCTCTGTCAGGCAAAGTGAGA
CGATGAGTTTAGGACACCAGGACCTCAAGAGAACCATCAGAAAAGAGAGG
CTTACAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCT
TCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACC
ATCTGTAATGAGATCTGACTCTCTCTTCTGGAGTGTCTGAAGACAGCTAC
AGTGTCCTTACATATAATAAATACATAAATTAAAAAAAACAATAAAAAAG
AGAGGCTTA

CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCTGGCAGCCTCAGGAGCATGAGCA
GGCAGTCCACCTTTAACAAGTGGTCTCCACACCCCAGTGTAGCCATTTTC
GACATATGTATGCTTTGTGTGTGTGATAAGTGTCTGCATTTTCTGCTGCT
CTCTGCTTTCTGACCGTCTTAATGGGCTATTGGAAGACTTCCACGCCCAC
TGACCCTGTGGCTGCCTGGTGGAGTTGTCATGTGGCTGGAAGTCACAAGA
GGTGTCTGCGGTGATGTTTTCTCTAAGATAGAAAAAGAGAGCCCTTTGAG
AAAGCTGGGGGTTGTAGGCAACCAATTTGGGTTGGCCAATCTCTCCTTGA
AGTCTGAAATCTGTGCAAGCCCACACTGTCGCCTCCGGATGAGTCCCTGG
GATGCGCTCACTGCTTAATTGTGTGCCTGGGGATTATTATTAGCAGAGAG
GACTAGGCGAGCAGCCCTACTGGGGGAACTCGGGCTCCTTGCTGTGTGTG
TCACATGACCTACCTCCTGGAGATGGTCTTTGAGTTGGGCAAAGACTTGA
AGAACGGCTGAGGCGGGTGGCCTCAGACAAGTGCTGCTGCTTTTCTGTTC
TGAGCCACATCTGAAGTCTCTATGTGGCCCTAGGAGAGCTATGATCCTGA
ACAGTGCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_n21.b1 MSMg01no262_n21.b1 CHROMAT_FILE:
MSMg01no262_n21.b1 PHD_FILE: MSMg01no262_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:37 2005
         (656 letters)



>mm_chr4_147233990_147235045
          Length = 1056

 Score = 1230 bits (636), Expect = 0.0
 Identities = 651/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctcaaactcagaaattcacctgcctctgcctcccgagtgctgggattaacggcgtgcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gcctcaaactcagaaattcacctgcctctgcctcccgagtgctgggattaaaggcgtgcg 260

                                                                       
Query: 61  ccaccaccactcctgggcatgtgtacatagcaaggatccttacccactgagccatctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaccaccactcctgggcatgtgtacatagcaaggatccttacccactgagccatctccc 320

                                                                       
Query: 121 caggcctaagatactttgacactgaccttggttctagcctgctttggggacccatcggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggcctaagatactttgacactgaccttggttctagcctgctttggggacccatcggtc 380

                                                                       
Query: 181 tggtagacagtcatctatctagatctgagagctacagtaaaagctatcgatctgagtagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtagacagtcatctatctagatctgagagctacagtaaaagctatcgatctgagtagg 440

                                                                       
Query: 241 gtccagtggcacatgcccatattccatactcaagaggtagatgcagaaggatcagaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtccagtggcacatgcccatattccatactcaagaggtagatgcagaaggatcagaagtt 500

                                                                       
Query: 301 caaggacagccttggctacattgtgactgccaggctagcctggcccctgtgagatcatac 360
           ||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||
Sbjct: 501 caaggacagccttggctacattgtgactgccaggctagcctgggctttgtgagatcatac 560

                                                                       
Query: 361 ggtagagaatacacaaaaaagccacactcccagtgtgaccaccagattcccaatgtctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtagagaatacacaaaaaagccacactcccagtgtgaccaccagattcccaatgtctct 620

                                                                       
Query: 421 gtcaggcaaagtgagacgatgagtttaggacaccaggacctcaagagaaccatcagaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcaggcaaagtgagacgatgagtttaggacaccaggacctcaagagaaccatcagaaaa 680

                                                                       
Query: 481 gagaggcttacagggctggtgagatggctcagtgggtaagagcacctgactgctcttccg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagaggcttacagggctggtgagatggctcagtgggtaagagcacctgactgctcttccg 740

                                                                       
Query: 541 aaggtccggagttcaaatcccagcaaccacatggtggctcacaaccatctgtaatgagat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaggtccggagttcaaatcccagcaaccacatggtggctcacaaccatctgtaatgagat 800

                                                                   
Query: 601 ctgactctctcttctggagtgtctgaagacagctacagtgtccttacatataataa 656
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctgactccctcttctggagtgtctgaagacagctacagtgtccttacatataataa 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no262_n21.g1 MSMg01no262_n21.g1 CHROMAT_FILE:
MSMg01no262_n21.g1 PHD_FILE: MSMg01no262_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:37 2005
         (530 letters)



>mm_chr4_147373174_147374103
          Length = 930

 Score =  994 bits (514), Expect = 0.0
 Identities = 526/530 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctggcagcctcaggagcatgagcaggcagtccacctttaacaagtggtctccacaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ttctggcagcctcaggagcatgagcaggcagtccacctttaacaagtggtctccacaccc 671

                                                                       
Query: 61  cagtgtagccattttcgacatatgtatgctttgtgtgtgtgataagtgtctgcattttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 670 cagtgtagccattttcgacatatgtatgctttgtgtgtgtgataagtgtgtgcattttct 611

                                                                       
Query: 121 gctgctctctgctttctgaccgtcttaatgggctattggaagacttccacgcccactgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 610 gctgctctctgctttctgaccgtcttaatgggctattggaagacttccacgcccattgac 551

                                                                       
Query: 181 cctgtggctgcctggtggagttgtcatgtggctggaagtcacaagaggtgtctgcggtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cctgtggctgcctggtggagttgtcatgtggctggaagtcacaagaggtgtctgcggtga 491

                                                                       
Query: 241 tgttttctctaagatagaaaaagagagccctttgagaaagctgggggttgtaggcaacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgttttctctaagatagaaaaagagagccctttgagaaagctgggggttgtaggcaacca 431

                                                                       
Query: 301 atttgggttggccaatctctccttgaagtctgaaatctgtgcaagcccacactgtcgcct 360
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 430 atttgggttggccaatctctccttgaagtctgaaatctgtgcaagttcacactgtcgcct 371

                                                                       
Query: 361 ccggatgagtccctgggatgcgctcactgcttaattgtgtgcctggggattattattagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccggatgagtccctgggatgcgctcactgcttaattgtgtgcctggggattattattagc 311

                                                                       
Query: 421 agagaggactaggcgagcagccctactgggggaactcgggctccttgctgtgtgtgtcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agagaggactaggcgagcagccctactgggggaactcgggctccttgctgtgtgtgtcac 251

                                                             
Query: 481 atgacctacctcctggagatggtctttgagttgggcaaagacttgaagaa 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atgacctacctcctggagatggtctttgagttgggcaaagacttgaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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