Query= MSMg01no263_b07.b1 MSMg01no263_b07.b1 CHROMAT_FILE:
MSMg01no263_b07.b1 PHD_FILE: MSMg01no263_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:53 2005
(677 letters)
>mm_chr4_23233373_23234448
Length = 1076
Score = 1241 bits (642), Expect = 0.0
Identities = 663/670 (98%), Gaps = 1/670 (0%)
Strand = Plus / Plus
Query: 5 gaattcttaaacttaagaaagtgtttcttagctagcacatggactctagaagactgtcct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaaacttaagaaagtgtttcttagctagcacatggactctagaagactgtcct 264
Query: 65 atattttaaatcctgttcttgcaatttagtatcgtattattcttatagaagtccctggga 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 atattttaaatcctgttcttgcaattcagtatcgtattattcttatagaagtccctggga 324
Query: 125 cataggaaaattcactctcctaacttacaaagtgaagtttaatcaaaggactactgagcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cataggaaaattcactctcctaacttacaaagtgaagtttaatcaaaggactactgagcc 384
Query: 185 acaagtactataaaacttcacacgcacacatctgtgcttataggatgtgtaactggtatt 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaagtactataaaacttcacatgcacacatctgtgcttataggatgtgtaactggtatt 444
Query: 245 cagaaaacgatgatgataatgatggctgcagtttcctggtgaatctgtgtatactcagta 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 cagaaaacgatgatgataatgatggct-cagtttcctggtgaatctgtgtatactcagta 503
Query: 305 tactttgaagtatttccctctttcaggaggaaaatacttaaatctatgaactgtatttgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tactttgaagtatttccctctttcaggaggaaaatacttaaatctatgaactgtatttgt 563
Query: 365 aaaataaaattgactttgactgtgtacctggccacataccttctttactatattgcattt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaataaaattgactttgactgtgtacctggccacataccttctttactatattgcattt 623
Query: 425 agagctctcaatattttataatctgaatagtatgaaaaatgttagcactattaatatttc 484
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atagctctcaatattttataatctgaatagtatgaaaaatgttagcactattaatatttc 683
Query: 485 tggagacttgataagggtggatagaaaaaaccaatttaaaaatattaaaatcaaagaaag 544
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 684 tggagacttgataagggtggatagagaaaaccaatttaaaaatattaaaatcaaagaaag 743
Query: 545 ctgcactagttagctgcagtgtcagaaatgagcaatagccactgttttatgatatttatc 604
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctacactagttagctgcagtgtcagaaatgagcaatagccactgttttatgatatttatc 803
Query: 605 tcactattactttctgtgttgttctaaactaggactctcattcgtagaagcagccagtag 664
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 804 tcactattactttctgtgttgttctaaactagaactctcattcgtagaagcagccagtag 863
Query: 665 ttcttcactg 674
||||||||||
Sbjct: 864 ttcttcactg 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1076
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1066
Effective search space: 711022
Effective search space used: 711022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_b07.g1 MSMg01no263_b07.g1 CHROMAT_FILE:
MSMg01no263_b07.g1 PHD_FILE: MSMg01no263_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:54 2005
(526 letters)
>mm_chr4_23392362_23393288
Length = 927
Score = 630 bits (326), Expect = 0.0
Identities = 407/464 (87%), Gaps = 50/464 (10%)
Strand = Plus / Minus
Query: 106 tatggctaaagataacaaaaggagatcaaggggtacaaattgtcaaagaagaagtcaaga 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 926 tatggctaaagataacaaaaggagatcaaggggtacaaattgtcaaagaagaagttaaga 867
Query: 166 tatcactatttgcagatgatatgaa---agtagtatttaaaaggagagaaaaataactat 222
|||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 866 tatctctatttgcagatgatatgaaagtagtagtatttaaaaggagagaaaaatacctat 807
Query: 223 acatacaaattagagaaaatatttaagaccaggaatttaaa------------------- 263
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 acatacaaattagagaaaatatttaagaccaggaatttaaaaaatacataagagtcacgc 747
Query: 264 -------------------------aaatacataagcaaacccaaattttattctgtaag 298
|||||||||||||||||||||||||||||||||||
Sbjct: 746 caagatattaaaaaataataataataaatacataagcaaacccaaattttattctgtaag 687
Query: 299 aaagggtcatagaattaaattaattaaaagaaaatggcatatttcaagctaaatctattt 358
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 686 aaagggtcatagaattaaattaattaaaagaaaatggcatattttaagctaaatttattt 627
Query: 359 tttt-aattttcaatggaagtaatcttttaccatagttcatagtgcgttatttcaaca-t 416
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 626 ttttaaattttcaatggaagtaatcttttaccatagttcatagtgcgttatttcaa-agt 568
Query: 417 cactcatgtagattatcatataagatatcacatactactctaaacaaaccatggagatat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 567 cactcatgtagattatcatataagatatcacatactactctaaacaaaccatgaagatat 508
Query: 477 catgtgtttagtggttgggaaaattactcttgtctcaataacta 520
|||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 507 catgtggttagtggttgggaaaattactcttgtctcaataacta 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 927
Length adjustment: 10
Effective length of query: 516
Effective length of database: 917
Effective search space: 473172
Effective search space used: 473172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
