BAC Information

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BAC

Clone NameMSMg01-263F05
Chromosome4 (Build37)
Map Location 133,686,785 - 133,687,075
singlet/doubletsinglet
Overlap geneCcdc21
Upstream geneWasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3
Downstream geneEG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263F05.T7 (MSMg01no263_f05.b1)MSMg01-263F05.TJ (MSMg01no263_f05.g1)
ACCAG405180AG405181
length875765
length of high quality
(start - end)
77 (49 - 125)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no263_f05.b1 PHD_FILE: MSMg01no263_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:13 2005CHROMAT_FILE: MSMg01no263_f05.g1 PHD_FILE: MSMg01no263_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGCTGGTGTTGCTATGGCAGCCCAAGTAGATAATTGCATTTT
TAACTCGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTCTGCCAAAAACC
ACACCCACTCATTCTACCAAAACATACCCCATATCCACACTACCAATATA
TTACCCTCCCCACCACCTCCAATTACACACAAACAAAATTTCACTATCCT
CCCCAAACTTCCATTATAAATAAAAACATAAAAATTAACTTTCCAAAATA
CCAATACCCAACACCCCCAATTACCCAACACCTCTCTTTTTTTTTTTTTT
TCCCTTCTTAACCTTCTCCCAACCACATTCTACAAATTTTTTTATATTTT
ACCCCCCCCCAACACCCCCCCTATAACCTTTTTTTAAATTATACCCCCTA
ATTTTCCCCCCCCCCCCAAAAAAAAAAAAAAAAAAACTCTACCCAACTAT
ACCCCCACCCCCTACTACCCCTCATACCCAAATAAATACAAAACACACAC
AAAATATACCCCCCCCCCACCATCCCCAAACCCCAAAAAAACCAATTAAA
TATCCACCTAAAAAAACCACATAAAAAAAAACACACCATAACAAATTCCC
ATACCCCACAAAACACATATCCATAACAATAATTAATTTCTCAAATATAA
ACACATAACAAAACCAAACCATCACACCAACACACCCAAAAAAACACCAC
AACACCCACAATCAACACAAACCCCAATAAAATCCTAAATCACCCCAACA
AAATAAACTCAAAACAATCAAACCCTCATATCTAAAAAACACCCACCACA
ATAAACACCAAACTATAAAAACAAN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTAAAAGGTTGCTACTCCTACTTTACCCT
TTAGGCCTCTCTTAAAAGAGCATCAGTAGGACCAAGGTATGGATAGGAAT
GAACATGGATCCGTCCTGGAGGATGGAGGGGAGGCCAGCAGCCTGTTTGC
TTCTCATGCCAGGTTAGAGCTGGGAACAACTTGTGAGGACTTTATCAGTT
GAAATCTGCAAAAAGGTTAATTAGTAACTCAGTCTTTAAGAGTGAATTAA
GATAACAAGCAAAACATAACCCAATAAGGCAAAGCCAGAGAACAGCAAAA
CAGGCAGGCTTCTCTTTTACCCTCGCCCCCCCCCACAGGCTCTCCCCTCT
GGGTGCAGCAGCTGCACCCCATAACTCTCAAGGAAGGAACCTTCTGGCGA
GGCAGCAGCAGCCTAAGTCCTCCCTGGCACTCCTCACTGTGTGGCACAGT
TTTCTCCCATGTCCTGGGCATATCTGTCTGACAGGCTGGTCCTTAAGTCC
TCAATGTCATGGCGCAGTTGTTGAATCTCTTCTAGTTTCCTCCTGATCAC
ATCTGGCTTTTGTAGATCTAGCTGCGTCCCTGGCTGCTGCGTGACTGAGG
AGGATAGAGTTTCTAGAGTGCCTTATTCCGACGTGATTGTAAATTTCCCT
GAACAATCGGTCGGAATTCATTATTTCATTTATGTTCATTCTCTTATGTG
CATCCTCTTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_f05.g1 MSMg01no263_f05.g1 CHROMAT_FILE:
MSMg01no263_f05.g1 PHD_FILE: MSMg01no263_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:13 2005
         (291 letters)



>mm_chr4_133686585_133687275
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaaaggttgctactcctactttaccctttaggcctctcttaaaagagcatcagtagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaaaggttgctactcctactttaccctttaggcctctcttaaaagagcatcagtagga 260

                                                                       
Query: 61  ccaaggtatggataggaatgaacatggatccgtcctggaggatggaggggaggccagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaggtatggataggaatgaacatggatccgtcctggaggatggaggggaggccagcag 320

                                                                       
Query: 121 cctgtttgcttctcatgccaggttagagctgggaacaacttgtgaggactttatcagttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgtttgcttctcatgccaggttagagctgggaacaacttgtgaggactttatcagttg 380

                                                                       
Query: 181 aaatctgcaaaaaggttaattagtaactcagtctttaagagtgaattaagataacaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatctgcaaaaaggttaattagtaactcagtctttaagagtgaattaagataacaagca 440

                                                              
Query: 241 aaacataacccaataaggcaaagccagagaacagcaaaacaggcaggcttc 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacataacccaataaggcaaagccagagaacagcaaaacaggcaggcttc 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)