BAC Information

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BAC

Clone NameMSMg01-263L19
Chromosome4 (Build37)
Map Location 17,418,454 - 17,576,397
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263L19.T7 (MSMg01no263_l19.b1)MSMg01-263L19.TJ (MSMg01no263_l19.g1)
ACCAG405477AG405478
length768730
length of high quality
(start - end)		321 (47 - 367)509 (78 - 586)
definitionCHROMAT_FILE: MSMg01no263_l19.b1 PHD_FILE: MSMg01no263_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:44 2005CHROMAT_FILE: MSMg01no263_l19.g1 PHD_FILE: MSMg01no263_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,418,454 - 17,418,771)(17,575,891 - 17,576,397)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCTGTAAACCAAGACAAAGGAACAAAATTTTTTATAAATAACC
CAAGCAAAAACCACATAAAGTATAACAACAAAGCCCTCTCTACAACAAAT
ACATGTCCATTTCTGTAGATCACATGTGAACCTTCTATTATTAATCATAT
TTGTTAATCATATTCCAATTCAAAATTGGCAGCAAAATGTTGTCTGTTTT
TAAAAATGTTAATGTTATACTAAGTTAAAATTGTAAGATGTCCACCTACA
AAGCAAGTAGTATTTTATTGACTTACTTATTTAAGAGAAATTTGTTTATT
TGATATTTTATAGCCCTGTATTTGTTCTACCCCCCCCTCCTAACAAGGGA
TGTTTTACTCACATTGCTGCTCTCCCCCCCCAAAAGAAATAAATAATGAA
ATGGGATTCACATGCATGGGCCTCTTATTGTTCCAGTTCTCACTAGTACA
GGGACCGTTTTCTCACAGGTCCCAGACAAAATGATTCTTTATGCATTTAG
ACACAACAGATACTTTCCAGGAAGGTTGTTTTCCAGTTTTAGAATATAAA
ACTTTCCCTTAGCTACGTCTTATTTACACAGCCCGATTGTATTTTTACTA
TAAGCATGCTTGTATTTTTCACTGTTAAAATACCTCTATATACATTTAAC
CCCCTATAAATGCTTTCTATTAATACCCTCCTTCCTTATTCCCCCCCTTT
TCACCCACTTTTTTTCTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATAAAAGTCTTAAAAATGTTG
CAATGTGAAATTTAGCTGAAACGGAATTTATTATTTTGAACATAAAGTTG
AGTTTTATTCCAAAAATATTACTATTATTTTAGCTCATGGCTTCCAGTTC
CAATTTGTTTTCTTGGGCAGATGCTTGGTTTCTTTAAATATGCAGAATGT
GATGATTTTCTCTAATACTTGATGTTAATTGTTCTAAGATAAATTAACTT
TGTGGCTTTGAAAGAGGATCCTTAAATAAGTCAATTCCTTGTTAAGAGAA
GTGTAACTATAATATCTACTTCATAGAAAATACATATTAACTCCTCATCT
TTTGATGAATTTCCAACTCATCAAAACTGAATTATAATAAACATTTTCCT
TTGAAAGTGTTGCCTTTTCTCTTCAAACCAATGGAAACCCAAAATAAGAC
AGAAGTTGGTACTAGGGACTGGGTTATTGTTGTGATAAATCTGACCACAC
TTTTATTTTGAGGAATGTGGATTGTGGGATTTTGNNNANTNTTTTTTTGT
TTTTNTTTTNCTTTTTNTTTTTTTTTTGTTTTTTTTTTTTTTTTGGTTTT
TTGTTCTTGTTTTTTTTTTGTTTTTTCTTGTTGTGTTGTCTTTGTCTTTT
TTTTTTTGTCCCTTTTCCCCCCCTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_l19.b1 MSMg01no263_l19.b1 CHROMAT_FILE:
MSMg01no263_l19.b1 PHD_FILE: MSMg01no263_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:44 2005
         (321 letters)



>mm_chr4_17418251_17418971
          Length = 721

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacctgtaaaccaagacaaaggaacaaaattttttataaataacccaagcaaaa 63
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatctgtaaaccaagacaaaggaacaaaattttttataaataacccaagcaaaa 263

                                                                       
Query: 64  accacataaagtataacaacaaagccctctctacaacaaatacatgtccatttctgtaga 123
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 accacataaagtataacaacaaagctctctctacaacaaatacatgtccatttctgtaga 323

                                                                       
Query: 124 tcacatgtgaaccttctattattaatcatatttgttaatcatattccaattcaaaattgg 183
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 tcacatgtgaaccttctattattaatcagatttgttaatcatattccaattcaaaattgg 383

                                                                       
Query: 184 cagcaaaatgttgtctgtttttaaaaatgttaatgttatactaagttaaaattgtaagat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagcaaaatgttgtctgtttttaaaaatgttaatgttatactaagttaaaattgtaagat 443

                                                                       
Query: 244 gtccacctacaaagcaagtagtattttattgacttacttatttaagagaaatttgtttat 303
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 444 gtccacctacaaagcaagtagtattttattgacttacttatttaagaaaaatttgtttat 503

                             
Query: 304 ttgatattttatagccct 321
           ||||||||||||||||||
Sbjct: 504 ttgatattttatagccct 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no263_l19.g1 MSMg01no263_l19.g1 CHROMAT_FILE:
MSMg01no263_l19.g1 PHD_FILE: MSMg01no263_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:44 2005
         (509 letters)



>mm_chr4_17575838_17576746
          Length = 909

 Score =  926 bits (479), Expect = 0.0
 Identities = 500/507 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcataaaagtcttaaaaatgttgcaatgtgaaatttagctgaaacggaatttattatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 560 tcataaaagtcttaaaaatgttgcaatgtgaaatttagctgaaacagaatttattatttt 501

                                                                       
Query: 61  gaacataaagttgagttttattccaaaaatattactattattttagctcatggcttccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaacataaagttgagttttattccaaaaatattactattattttagctcatggcttccag 441

                                                                       
Query: 121 ttccaatttgttttcttgggcagatgcttggtttctttaaatatgcagaatgtgatgatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttccaatttgttttcttgggcagatgcttggtttctttaaatatgcagaatgtgatgatt 381

                                                                       
Query: 181 ttctctaatacttgatgttaattgttctaagataaattaactttgtggctttgaaagagg 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 380 ttctctaatacttgatgttaattgttctaagataaattaagtttgtggctttgaaagagg 321

                                                                       
Query: 241 atccttaaataagtcaattccttgttaagagaagtgtaactataatatctacttcataga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atccttaaataagtcaattccttgttaagagaagtgtaactataatatctacttcataga 261

                                                                       
Query: 301 aaatacatattaactcctcatcttttgatgaatttccaactcatcaaaactgaattataa 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaatacatattaactcttcatcttttgatgaatttccaactcatcaaaactgaattataa 201

                                                                       
Query: 361 taaacattttcctttgaaagtgttgccttttctcttcaaaccaatggaaacccaaaataa 420
           || ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 200 tacacattttcctttgcaagtgttgccttttctcttcaaaccaatggaaaccaaaaataa 141

                                                                       
Query: 421 gacagaagttggtactagggactgggttattgttgtgataaatctgaccacacttttatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 140 gacagaagttggtactagggactgggttattgttgtgataaatctgatcacacttttatt 81

                                      
Query: 481 ttgaggaatgtggattgtgggattttg 507
           |||||||||||||||||||||||||||
Sbjct: 80  ttgaggaatgtggattgtgggattttg 54


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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