BAC Information

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BAC

Clone NameMSMg01-263O14
Chromosome4 (Build37)
Map Location 8,987,383 - 8,987,672
singlet/doubletsinglet
Overlap genenone
Upstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782
Downstream geneLOC100039584, 4933402J24Rik, Asph, Gdf6, 4930448K20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263O14.T7 (MSMg01no263_o14.b1)MSMg01-263O14.TJ (MSMg01no263_o14.g1)
ACCAG405604AG405605
length787823
length of high quality
(start - end)
290 (70 - 359)---
definitionCHROMAT_FILE: MSMg01no263_o14.b1 PHD_FILE: MSMg01no263_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:57 2005CHROMAT_FILE: MSMg01no263_o14.g1 PHD_FILE: MSMg01no263_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTGGCATGTACCATGTGGGGGTAATTCTGTCTTTGTCTGGCTGCTAC
TCTCTCCCTGCCCTCATCCCCTCTGATGTCTGCCTGAGTGGAAAGAATCT
ATTGCTGTGTTGGCTCTTCCTGAAATCTACAGGGTGGGGGAGGAGGTACA
GCTCCACCAGCAGAGACATGGCATGTGACAAAGCCCTGTGGACTCCTCCC
TTTGACAGAGATGAGCAAGGAGGAATTGCAGCGTGTGGCGGGGTGACCTA
GCTGGCTTCAGCCACTGTGTTTGTTCATTTGTCTTTCAGTGCCCAACTGA
GTCCTCATGTGTTTTTTACCGCCCCCACCCACACAATCCTACTCTAAGAG
TCGGGATTCTCCCCCCCCTTTTTACAAAAAAAATTCATTTCCTGTTGGTT
AATTTACTGAAAGACTCGCTTGTCATATTATCTGGACCCGAGATTCTTAT
CTCACATTTCGCCCATCCCGCCTTTCCTTTTTTTTTTCATCCCTACCAAT
TAATTTCTTCTTTCTACTTCCCTCCTTTCTCACTTTATTATTTTCAATTT
ATTTCTCTTTATTTTATACACTATTTTCATTTTTTTTTTTTATAATTTAC
TTTTTAATTCTATTTTTCATTCATTTATTCTTTCTTTCTTTTACTCCATC
CCTCATATATTCTTTTACCACCCTACCTCTAACACCTATCTCTAACATAT
TATTCCACCAACCATCCTTAATCACTATTTTTATTCG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCCGGAAGNGCGGGGAACCANNNNGGNCC
CAGGNGCNGGNGCAGCAAGAACGGNCCTAACTCCGCCANGNCNGCAGCCC
AGGNGNNGGNGGNCNNAAGAACAGGGGNANGAGGAGCCAGGACNGGNGGG
GAGCAGGGNGACANACGGGGGAGNNANAAGGAAGNAANAGNNCNGGAGGC
NNNCCACGCACTTTTTTCCGACAAACCCAGCAACAGGGAGGGCACCCAGA
CAGACACCCGGAAAACACCGCAGAACATGTTTAAATAGTTTTTCAGCAAC
CCCCCACCCCCAGAGCCAGGCAAATTTTTTTTTTTCCCCCCCCCCCCCCC
CCCACAAAAAGAGAAGAAGAATGGAGAGACACGCCCCCCCCCCCTAAAAA
AAAAAAAAAAATTAGGGGGGGGGGGGGGGGTTTTCTTCTCCTTTCCCCCT
ACCCCCAAANATTTAGCGTATACTACCCTTTTTCACTTTTTCCCCACTTT
ACCCCCTTTTTCTTCTCTTCCCCCTCTTTCTTTTATTCCTCCTTTCCCCC
TTCATTTTTTTTTCCCTCTTTTTTCTCCCCCCCTTTCCCCCCCTCTTCCC
TTCCCTTCCTTCTTTCCCCCCCTTTTTTCTTCCTTTTCCCCCCCTTTTCC
CCCCCCCAAACCTTTTTTTTTTTTTTTTTCCCCACTGTATTAACCCCCCC
CCTTTTCTCCCTTTTTCTACACTCTCCCCCATTCCTATTTTCCCTTTTCC
GCTGTCTTTTCCTCTCCCCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_o14.b1 MSMg01no263_o14.b1 CHROMAT_FILE:
MSMg01no263_o14.b1 PHD_FILE: MSMg01no263_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:57 2005
         (290 letters)



>mm_chr4_8987183_8987872
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggggtaattctgtctttgtctggctgctactctctccctgccctcatcccctctgatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 490 gggggtaattctgtctttgtctggctgctactctctccctgccctcatcccttctgatgt 431

                                                                       
Query: 61  ctgcctgagtggaaagaatctattgctgtgttggctcttcctgaaatctacagggtgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctgcctgagtggaaagaatctattgctgtgttggctcttcctgaaatctacagggtgggg 371

                                                                       
Query: 121 gaggaggtacagctccaccagcagagacatggcatgtgacaaagccctgtggactcctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gaggaggtacagctccaccagcagagacatggcatgtgacaaagccctgtggactcctcc 311

                                                                       
Query: 181 ctttgacagagatgagcaaggaggaattgcagcgtgtggcggggtgacctagctggcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctttgacagagatgagcaaggaggaattgcagcgtgtggcggggtgacctagctggcttc 251

                                                             
Query: 241 agccactgtgtttgttcatttgtctttcagtgcccaactgagtcctcatg 290
           ||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 250 agccactgtgtttggccatttgtctttcagtgcccaactgagtcctcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)