BAC Information

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BAC

Clone NameMSMg01-264C08
Chromosome4 (Build37)
Map Location 114,155,705 - 114,331,082
singlet/doubletdoublet
Overlap geneLOC666048
Upstream geneLOC242627, LOC100040625, A630098G03Rik
Downstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264C08.T7 (MSMg01no264_c08.b1)MSMg01-264C08.TJ (MSMg01no264_c08.g1)
ACCAG405774AG405775
length733838
length of high quality
(start - end)
317 (46 - 362)198 (127 - 324)
definitionCHROMAT_FILE: MSMg01no264_c08.b1 PHD_FILE: MSMg01no264_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:15 2005CHROMAT_FILE: MSMg01no264_c08.g1 PHD_FILE: MSMg01no264_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,155,705 - 114,156,014)(114,330,885 - 114,331,082)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGAACAGAGATGCCCTCTCTTCGGGTAGCAGTTTTCTTACCAC
TAGCATGATGGTGATAGGGAGGCTCTCAACAGTGTCTAGGTGGCCTTGGC
AGGGCTTTGGTGCCCTTCTGGCTTGTAACTCCCCAAGATGCCACTTAGGT
TACCTGCAGTTCCAGGTATATATCATGGGTGTCCTTAAAGAGCTAAGCCT
GGACTTTCTTTATGTCAGTAGGAGGCATGAGGGCACTTGTTTTGTAGAGA
GCCATAAGTATATCCATGGATCTGGAACAGAAAAGCAGATAGAAATAGGA
CTATATCCTATTGTACTTTTACCTAACGATGCCTGTTCAAGGGGATCCTG
GCTGGGTCCAGCTCATGATATACCCAAAAAATTAGCCACCACTTGCCAAT
GAATATATAAGTGACTGGAACCTCCTCCTACAACAAAGGGGACATATCGG
TATCTAATGTAGGAAAGACAGAAAGAGTGGCTGTATGAGTGAATGAATCA
AGGAATGAACTGTTTAAAGAAGTCTAAATCCACCTCATTTCTTTATCAAA
AACACTGATACAAATTCAATTTAGAATTGGAATTTGGAAATTTGACAGTG
TCATAAAGAGTATATGCATTTTAACACCCTGTAGTATCCTGGAGTAGCAT
CCACAATCTAGCTAATTAATATTTGTGGAACAN
CCTCCTCTTTTCTTCTCTTTTTTNCTTTANNCACAATAATATTTTTTTTT
TCTATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGTCAGTGTTTATTTCTTCCT
TCTCTTCCCCACCATAGACCCTCTTTGTCTATGCCCTTTCCATTTGGGTA
TCCAGTCTTCCCATGATGCTTTGTGAAGGTTCCAGCCCCTTACGGGGATG
CTTCTTCCATCCCAGTGCCACCTGTCTGGATGGGCTTCCAGCACCTTCAC
TAGCACACAGCTTCCTGTACAGCAGAGGGGAAGGATATCCTGCACCAACA
GCTACAACTTGCACGTATAATGAAACTTTTTCAGAGAGTAGATCTGAGTA
GAGAGTTCCAAAGATTGNNCTGNGTTCCAAGAACGGAGACCTTATTGATT
TTTGTTGTATACCCACCACAGCAAGCCTGTGACAGAAAAAAAAAAAAAGT
TCTGAGAGTGGAGTCTTCTTCCCTGTAGTTGTGCCTTAGGTCACACTTGA
AGTAAGACTGAGATAGTCATCTGGGCTGTCCTCAGATTATCTCAGGATCC
TCCAAAACAGCAGGCTCCCTCCAGTTGCCTTTGTAGAGAGTAAGTCTGAA
ACTTCCTGTATTTAAAACTCAAAGACTCTGTTATTATGTATAATAATTTC
TCGTTTTTCTTGTTTGTCTTGATTACGCTGTGTATTTTTTAATTTAATGT
AACATGTGATACCCCTGGATGAATTAATATTATCCATTCTGAAACCTTGG
ATTTTACTGTGTGGCTATTATTTCATATATTAATTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_c08.b1 MSMg01no264_c08.b1 CHROMAT_FILE:
MSMg01no264_c08.b1 PHD_FILE: MSMg01no264_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:15 2005
         (317 letters)



>mm_chr4_114155500_114156216
          Length = 717

 Score =  553 bits (286), Expect = e-162
 Identities = 304/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattccaggaacagagatgccctctcttcgggtagcagttttcttaccactagcatgatg 65
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattccaggaacacagatgccctctcttcgggtagcagttttcttaccactagcatgatg 265

                                                                       
Query: 66  gtgatagggaggctctcaacagtgtctaggtggccttggcagggctttggtgcccttctg 125
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 266 gtgatagggaggctctcaacagtgtctaggtggccttggcagggctttggtgtccttctg 325

                                                                       
Query: 126 gcttgtaactccccaagatgccacttaggttacctgcagttccaggtatatatcatgggt 185
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcttgtgactccccaagatgccacttaggttacctgcagttccaggtatatatcatgggt 385

                                                                       
Query: 186 gtccttaaagagctaagcctggactttctttatgtcagtaggaggcatgagggcacttgt 245
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 386 gtccttaaagagctaagcctggactttctttatgtcagttggaggcatgagggcacttgt 445

                                                                       
Query: 246 tttgtagagagccataagtatatccatggatctggaacagaaaagcagatagaaatagga 305
           ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 446 tttgtagagagtcataagtatatccatggacctggaacagaaaagcagatagaaatagga 505

                     
Query: 306 ctatatccta 315
           ||||||||||
Sbjct: 506 ctatatccta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no264_c08.g1 MSMg01no264_c08.g1 CHROMAT_FILE:
MSMg01no264_c08.g1 PHD_FILE: MSMg01no264_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:15 2005
         (198 letters)



>mm_chr4_114330685_114331282
          Length = 598

 Score =  360 bits (186), Expect = e-104
 Identities = 195/198 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggtcagtgtttatttcttccttctcttccccaccatagaccctctttgtctatgccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tctggtcagtgtttatttcttccttctcttccccaccatagaccctctttgtctatgccc 339

                                                                       
Query: 61  tttccatttgggtatccagtcttcccatgatgctttgtgaaggttccagccccttacggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 338 tttccatttgggtatccagtcttcccatgatgctttgtgaaggttccagccccctacggg 279

                                                                       
Query: 121 gatgcttcttccatcccagtgccacctgtctggatgggcttccagcaccttcactagcac 180
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 278 gatgcctcttccatcccagtgccacctgtctgaatgggcttccagcaccttcactagcac 219

                             
Query: 181 acagcttcctgtacagca 198
           ||||||||||||||||||
Sbjct: 218 acagcttcctgtacagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)