BAC Information

Click to search

BAC

Clone NameMSMg01-264C12
Chromosome4 (Build37)
Map Location 49,456,754 - 49,457,045
singlet/doubletsinglet
Overlap genenone
Upstream geneTex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2
Downstream geneLOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264C12.T7 (MSMg01no264_c12.b1)MSMg01-264C12.TJ (MSMg01no264_c12.g1)
ACCAG405782AG405783
length708818
length of high quality
(start - end)
308 (44 - 351)61 (304 - 364)
definitionCHROMAT_FILE: MSMg01no264_c12.b1 PHD_FILE: MSMg01no264_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:16 2005CHROMAT_FILE: MSMg01no264_c12.g1 PHD_FILE: MSMg01no264_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCAGTTGCGGTGTGTGGGTGTTATTTTTCCATTCTGTTTAGAGTGT
ATCTACAAAACTTCTTAAAACATGTCTAAATGAAGAATCCAAGACCCACC
GTATATTTTATTTTAGCAGCTTGAATTTGACAAGAGATTGGAAGGCAGGC
CAAACCTGAAAATGTAGGATGCCCTTTGTATCAGGTCAGGACCTCCTGCA
GGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTACTTACT
GGCTTGCTTGAGTTTTAGTCCTGACATTCTTTGGTGATCAACAGCAATGT
GTATAGTTTGATTATGCCTAAACCCTTCCCTCCCCAACTGCTTCTTGGTC
ATTATGTTTTGTCCAGAAATAGAAAACAAGACTAAGGCAAATTGGTACCA
GCTGAGTGGGGTATTTCTATGATAAAGTGGCCATGTTTTAGGGAGTACTG
TGGAAGGACTTTGGAACTTTGGGCTAGAAGATCCATTCCGTGTTAAGGGC
TCTGTCAAATGTTATGTAGGAGCTTGGAAGATAATGTTGAGAACAGTGCA
GAAGATGGAGGCCTGGCTTGTGAAATTTCAGAGGGAAGATTAAAGACTCT
TCACAGAGCCATTGGTATTTGATTGTGAAGATTCTATGGTTCTGGTTAGC
TGGGGCTG
TTTTTTTTTTTTNNTNCCTCCTACCTNAACAAAAAAATNTNNTATACGAT
GAAGTGGGTAGCCTGGNGGACGCCTGGCTGCAGAATAAGGGNNGAANNAN
AGAAGGATTCCCAAAAAAAACNGANGANGGGNAAGGNNGCAGAGNNGACG
GAAACTNNNCCGGNACCCCCGGCACAGANAAGGGCGANCCCCCGCAGGGA
GCCTCNGANGCNCAAAAAGGAAGGAGCNCCGACAGAAACNCCNACCACAN
NCGAAACAAAGAAAAGGCTACACACCAGGGAGGAAAAAAAGGAGAGGAAT
TTTGTATGTACTTAATCTAAATGCTTTCCCACATTCACCACACTTATGAG
GTCTTTCTCCGGAATTTTTTTTCTTGAGAACAACAAGCAAGGAGAGACGA
AAAAATTTTTTTTTTTTTCCCCCCCCCCCCCAGGGTATATAAAAAGGGAG
AGGGAAAAGAGGGNNNNNNAAAAAAAAAAAAAAANGGNGGGGGGGGGGGG
GGAAAGAAAAAAAGGAGAAGAGAAAAAGAGAGAAAGAAAAGGAGAAAAAA
AAGGAAAAAAAGATGGAGGAAGATAAGGAATATATGATTATATTGTGATA
GGTTTTTTTTATAGAGGATTATATAATTGTATATTGAGGGTATATTTTTA
TATTATAGGTTTTAAATTAAAAATTAAATATTTATAAGTTGATTGTTATG
AGGGAAATATTTTGTTTGTTTAATAAAAAAGGGTAATTATTAATTGAAAT
ATTTATTATATATTTTATATGATTAGAAAAAGGATATTTAGAATAAGTGG
AGGTATATTTTTTAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_c12.b1 MSMg01no264_c12.b1 CHROMAT_FILE:
MSMg01no264_c12.b1 PHD_FILE: MSMg01no264_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:16 2005
         (308 letters)



>mm_chr4_49456551_49457257
          Length = 707

 Score =  466 bits (241), Expect = e-136
 Identities = 284/305 (93%), Gaps = 13/305 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcagttgcggtgtgtgggtgttatttttccattctgtttagagtgtatctac 63
           |||||||||||||||| ||||||||||||||  ||||||||||||||||||||| |||||
Sbjct: 204 ggaattcttcagttgcagtgtgtgggtgtta-ctttccattctgtttagagtgtgtctac 262

                                                                       
Query: 64  aaaacttcttaaaacatgtctaaatgaagaatccaagacccaccgtatattttattttag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaaacttcttaaaacatgtctaaatgaagaatccaagacccaccgtatattttattttag 322

                                                                       
Query: 124 cagcttgaatttgacaagagattggaaggcaggccaaacctgaaaatgtaggatgccctt 183
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caacttgaatttgacaagagattggaaggcaggccaaacctgaaaatgtaggatgccctt 382

                                                                       
Query: 184 tgtatcaggtcaggacctcctgcaggtcaggaagcaggagctgatgcagaggccatggag 243
           ||||| |  |          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtataa--t----------tgcaggtcaggaagcaggagctgatgcagaggccatggag 430

                                                                       
Query: 244 ggatgttacttactggcttgcttgagttttagtcctgacattctttggtgatcaacagca 303
           ||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||
Sbjct: 431 ggatgttacttactggcttgcttgaatttcagtcctgacatcctttggtgatcaacagca 490

                
Query: 304 atgtg 308
           |||||
Sbjct: 491 atgtg 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 707
Length adjustment: 9
Effective length of query: 299
Effective length of database: 698
Effective search space:   208702
Effective search space used:   208702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)