BAC Information

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BAC

Clone NameMSMg01-264D01
Chromosome4 (Build37)
Map Location 17,028,048 - 17,178,721
singlet/doubletdoublet
Overlap genenone
Upstream geneRipk2, LOC667150, LOC383994, LOC100040154, LOC667212
Downstream geneLOC100040173, Mmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264D01.T7 (MSMg01no264_d01.b1)MSMg01-264D01.TJ (MSMg01no264_d01.g1)
ACCAG405806AG405807
length732847
length of high quality
(start - end)		456 (46 - 501)124 (129 - 252)
definitionCHROMAT_FILE: MSMg01no264_d01.b1 PHD_FILE: MSMg01no264_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:18 2005CHROMAT_FILE: MSMg01no264_d01.g1 PHD_FILE: MSMg01no264_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,178,273 - 17,178,721)(17,028,048 - 17,028,169)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGCTGGCGAGATTCTAGCTCGGGCGAGAGTTTCCATTGCTGGAA
CAAATTTTGGAGCCATTAGCACCTTGTGAGAATCAATTATAACAATTTCC
AAAACATCTGAGCAGTGGCATCATCTCGGAAAACTGTAAAGTACCATAAA
TTTAAGTCACTTTCTCATGTATCCCTTCATGAATGTTATCTATGTGATGT
AATAGAATGAAACACATAAAACATCTGCTCAAACTCTTTTCTGTATCTCA
GAATAATGTAAGGCATGTTTCTCACACACTTACAGAAACATCAGGCTTAA
TACTTCTAAATGGAAACCCTTCGTCAGATTCCTTAAGGTGACACTTTGAC
ATTCAGGTCTCAATACAAGTGAGAATTTAGCACCGTGAATAACAAGGCAA
TTATTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAN
ANAAAAANAAAAAAAAAGATTAAAAAAAAAAAAAAATAAAAAAAAAAAAA
TAAAANAAAATTAAAANAAAAAATTATTATTTTTTTTTATATTTTTTTAT
TTATTTTTTTTATATTATTTTTTATATATTTAATAAAAATTTTATATATA
TTTAAAATAAATTAAATTATATATAATTATAATTATTTTTAATATTTTAT
TATTTATTATTTTTTTTTATTTTTTTTATATA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGAAAAATGCAGGTGTGGGTTTTCAT
TGTAGATTTGGTATCAAGATTTATTTCTATGAATATCTATGAAGGAATTG
ATGTTATAAAAAGGAAGATTAAGGGTAAAGTTAATATATTATATATCTTA
CTATAATAAGCATTGCTAGTCACAGTTACTAACTATAGATACCAACATAT
ANNNTCATNTTTNNNATATAGNNTTATGAATTTCTCCAAACATTTTAAAT
AATTTTTGGAAATTTTGTCTCTATAGATTTTATATGCCTTCACTATAGCT
TTCACTCCCCTTTTCATGTTGGAAATCCCCTGGGGCCCATAAAAAATTTT
TTTTTTTAAAAAAAGGGGGGGGACTACTTATTTACCGAAAGAGGGTTGGG
TTTTGGAGAGAGGGGGGACTTGATGTGGGGGGTCACGAGGGGTATTAGGG
GGATGAAGGTGAGATACGGGGAGTTAGACGGTTGGATTGGGACAAAAGGC
TATACTAACTAAAAAGAGAAGATAAAATATAAGAAAACAGAGCAAGAAGT
AAATAATAATAAAAAAGATAGAATAGTATAATTGTGAACGCGAAATAGTG
ATTGAAGATATGATCTAGAGGAAAGTATAAAAATGGGTGGGATAGGCGGA
GTGTTGGTTGGCGTGTTTGGTAAAGAGGGAGGGATGTTGTTTGTCTGAGG
TAACTGGACTAGGTGAACTATAGCGGTCCTGGTGCCGACCGCGTAGACAA
CATTGATGTGCAGGGTGCTGAATAATTGAAAGTCGATCTAGAGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_d01.b1 MSMg01no264_d01.b1 CHROMAT_FILE:
MSMg01no264_d01.b1 PHD_FILE: MSMg01no264_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:18 2005
         (456 letters)



>mm_chr4_17178078_17178933
          Length = 856

 Score =  806 bits (417), Expect = 0.0
 Identities = 441/449 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgctggcgagattctagctcgggcgagagtttccattgctggaacaaattttg 64
           |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 644 gaattcttgccggcgagattctagcttgggcgagagtttccattgctggaacaaattttg 585

                                                                       
Query: 65  gagccattagcaccttgtgagaatcaattataacaatttccaaaacatctgagcagtggc 124
           || |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gaaccatcagcatcttgtgagaatcaattataacaatttccaaaacatctgagcagtggc 525

                                                                       
Query: 125 atcatctcggaaaactgtaaagtaccataaatttaagtcactttctcatgtatcccttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 524 atcatctcggaaaactgtaaagtaccataaatttaagtcactttctcatgtattccttca 465

                                                                       
Query: 185 tgaatgttatctatgtgatgtaatagaatgaaacacataaaacatctgctcaaactcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgaatgttatctatgtgatgtaatagaatgaaacacataaaacatctgctcaaactcttt 405

                                                                       
Query: 245 tctgtatctcagaataatgtaaggcatgtttctcacacacttacagaaacatcaggctta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tctgtatctcagaataatgtaaggcatgtttctcacacacttacagaaacatcaggctta 345

                                                                       
Query: 305 atacttctaaatggaaacccttcgtcagattccttaaggtgacactttgacattcaggtc 364
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 344 atacttctaaatggaaacccttcatcagattccttaaggtgacactttgacattcaggtc 285

                                                                       
Query: 365 tcaatacaagtgagaatttagcaccgtgaataacaaggcaattattgtgagtgtgtgtgt 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tcaatacaggtgagaatttagcaccgtgaataacaaggcaattattgtgagtgtgtgtgt 225

                                        
Query: 425 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 453
           |||||||||||||||||||||||||||||
Sbjct: 224 gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 196


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no264_d01.g1 MSMg01no264_d01.g1 CHROMAT_FILE:
MSMg01no264_d01.g1 PHD_FILE: MSMg01no264_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:18 2005
         (124 letters)



>mm_chr4_17027848_17028371
          Length = 524

 Score =  213 bits (110), Expect = 3e-60
 Identities = 119/122 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaatatctatgaaggaattgatgttataaaaaggaagattaagggtaaagttaatata 60
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 201 atgaatatctatgaaggaattgatgttatcaaaaggaagattaagggtaaagttgatata 260

                                                                       
Query: 61  ttatatatcttactataataagcattgctagtcacagttactaactatagataccaacat 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ttatatatcttactataataagcattgctagtcacagttactaattatagataccaacat 320

             
Query: 121 at 122
           ||
Sbjct: 321 at 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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