BAC Information

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BAC

Clone NameMSMg01-264D07
Chromosome4 (Build37)
Map Location 59,785,121 - 59,785,432
singlet/doubletsinglet
Overlap gene1110054O05Rik
Upstream geneOlfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592
Downstream geneSnx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264D07.T7 (MSMg01no264_d07.b1)MSMg01-264D07.TJ (MSMg01no264_d07.g1)
ACCAG405818AG405819
length729831
length of high quality
(start - end)
314 (46 - 359)77 (214 - 290)
definitionCHROMAT_FILE: MSMg01no264_d07.b1 PHD_FILE: MSMg01no264_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:19 2005CHROMAT_FILE: MSMg01no264_d07.g1 PHD_FILE: MSMg01no264_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAAGGATAAGGAATTTTAATGCCTTGGTTTAAAAAAAAAGTGA
CTTTTCCTAACTGAGCTGGTTTTGTTTTGTTGTTTTTATCTTCCTCAGCA
TGCTCACGCACATTCCTCTGGCTACTTCATAACTCAAGACTCTGCCTTTG
GGAATCTGATTCTCCCTGTTTTACCTCGCCTTGACCCCGAATGAAGAAAG
CGCCTGCTGCGACAAGGGACCTTGTAATAGCAAATGTCAAAGTTCTCACT
CAGCTCTATACAAACTGACTTTCAGAACTTTGGAGAACTTAGCTTTTGTT
TCTTTAAAGATTTTAATGAGCACCCGCCCCAAAGAGAAGAGGAGCTGGGC
GCTGAGACCTCGGGGAGCGGCAGCGAGAACCTGGCTGTGCTGGCCGAGGC
GGACTTCTTTGTATTGCCATTGGACTTTCCCTGGGACTCAGGATCGCTTA
GTCTCATGAACTCTGCATCACCTTCAACAAGGACTGAATTATCATGTGGG
AAGCCCTGGGTTTGACCCCATCACTGCACATACAAGCTCTGAGGATGGCA
CATGCCTGTGATCTCAGCACTAGAGGAATTGAGGCAGAAGATTGGAAGTT
CAAGGCCATCCTTGCCTAGGTAGTGATTTTGAGACCAGTCTAAGGTATAT
GAGACTGTGCCTCANAAATAACCAAAATC
TTTTTTTTTTTTGNTCCCTCTTTCTATCATTAAATTTTNGNNNNTNTCTT
GTATGATATGTGTAGGCCTGGAGGACGCCTGGCTGCAGAATGAGANGNGA
ANNANAGAAGTTTTCCGAAAAAAAAGGNGANNGNNNNNGGAAAGNAANNN
GANAGGGNANAAANGGAGTATTACCCGCTCCAAGGGAGATTTGAGGGAGA
GTACAGTCAGAGGTAATTGAAGAGTTCAGAGCAGAGAGGAAATAGTAAAC
TGAACAGACTAGACGGGGCCTTGGGCTGTGGTTGTAGAGCAAGAGAGAAA
GATATATAGGGGCCAGAGAGGAAAAGGAGAGTGTCTAGCTGAAGTAGTAG
GTTTATAAGGGAATGAGAAATTTTTTTTTTAACCCATGAGCTAGAGAAGA
GCAGAGAAGAGTATTTTTTTTTTCCCCCCCCACCCCCCGAGNAATGGAGG
TAAGNATGGTCTGTGGTTTGCTTNTAGGATAAAAAAATAAAATTTTGTTC
GTTGCTGAAGTGATAAGAAAATGGTTCCTTTGCTGGAGGAGAATAGGTCC
TAGAAATTGGGGTAGTGGAATTTCCTTTGTAAATGAAAGGAAGTTTAAAG
AGTAATAATTAATTGCATTCATACTAGTTTAGTAATTATAATGTAAGGTA
TGGGTTAGATAAATGTAACCTATTTTTAATGTTAGATATCATAAAAAATA
ATTGTTTGAAATGTGAATAATTTGTTTTGTTTTGATTATAGACTTTGATT
ATTTGTGTCAAGGAATAAAAATCGGTATTTGTTTATATTACATAGAAAGA
CAAAAAATATTTTTAATTTCTTATATTGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_d07.b1 MSMg01no264_d07.b1 CHROMAT_FILE:
MSMg01no264_d07.b1 PHD_FILE: MSMg01no264_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:19 2005
         (314 letters)



>mm_chr4_59784918_59785632
          Length = 715

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%), Gaps = 1/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagaaaggataaggaattttaatgccttggtttaaaaaaaaagtgacttttcct 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 515 ggaattcagaaaggataaggaattttaatgccttggtttaaaaaaaaagtgacttttcat 456

                                                                       
Query: 64  aactgagctggttttgttttg-ttgtttttatcttcctcagcatgctcacgcacattcct 122
           ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 455 aactgagctggttttgttttgtttttttttatcttcctcagcatgctcacgcacattcct 396

                                                                       
Query: 123 ctggctacttcataactcaagactctgcctttgggaatctgattctccctgttttacctc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ctggctacttcataactcaagactctgcctttgggaatctgattctccctgttttacctc 336

                                                                       
Query: 183 gccttgaccccgaatgaagaaagcgcctgctgcgacaagggaccttgtaatagcaaatgt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gccttgaccccgaatgaagaaagcgcctgctgcgacaagggaccttgtaatagcaaatgt 276

                                                                       
Query: 243 caaagttctcactcagctctatacaaactgactttcagaactttggagaacttagctttt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 caaagttctcactcagctctatacaaactgactttcagaactttggagaacttagctttt 216

                       
Query: 303 gtttctttaaag 314
           ||||||||||||
Sbjct: 215 gtttctttaaag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 715
Length adjustment: 9
Effective length of query: 305
Effective length of database: 706
Effective search space:   215330
Effective search space used:   215330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)