BAC Information

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BAC

Clone NameMSMg01-265A16
Chromosome4 (Build37)
Map Location 131,480,091 - 131,632,544
singlet/doubletdoublet
Overlap geneEG623230, Epb4.1, LOC666480
Upstream geneLaptm5, Matn1, LOC622681, LOC100041575, Gm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865
Downstream geneLOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265A16.T7 (MSMg01no265_a16.b1)MSMg01-265A16.TJ (MSMg01no265_a16.g1)
ACCAG406419AG406420
length763770
length of high quality
(start - end)
206 (76 - 281)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no265_a16.b1 PHD_FILE: MSMg01no265_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:24 2005CHROMAT_FILE: MSMg01no265_a16.g1 PHD_FILE: MSMg01no265_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,632,339 - 131,632,544)(131,480,091 - 131,480,380)
sequence
CCATGTCTGCTCTCTCTGAGATGCATGACTGGATACATGTGAGAGCAATT
AAAAAAATAATACTGTATCTCTCCTTGAATAATTGCATTTGTAGTTTCCA
TTTCAGTTAACCAGTACAACAATTCTACGTAATGTTGGTGCAACGTCGTA
TTTTACCCCCAGGGAAACAAGCTTACCCACAGGCTCAATCCTGAATTAAT
GTTAGCAGGCTACATCCGAGTTTCTTGCTTTGACCAATAGACAACACTGC
CTTGGGTAGTAGGAGAGAGGAGTTTTGGTTGGCTTGGCATACTTAGNGNA
NGAANCAGTTTTTTTTTTTTTCCCCCCCCCCCCCTCCTCTATTATATATA
AATATTAAGTTTGCACCCCCCCCTTTGTATATCAAAATAAAAGTTGGTGG
GTTCCCTTTTCTNCTTTTTATATAAATTGACCTATATATACTATTCATTT
TTATTTATTTACTTTGATCTATATTTTACATCCTCTTGATCCATTTATTA
TATCGTGTTGTCCCGAGATCNACACTACTCGGATTGAATTATTAAATAAT
TATTACATATACCTTTTCTTGCNATGCTATTTAATATTATTATATCGCAA
TTAAATATCACGCTTACATGTTTGAAATTTCACCTTAATGATTACTTATA
GTTTTTATTGTACTAATTCAACTCTTTTACATTTTATTTATTTGTATTAT
TATATTATAATTATTCCTTTTATTTAATTNATATTCTTTCATTTATAATA
TATTATTACACTT
ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGTCCAATTTCCAGACAGAGGCG
GCAGCAGAGGGACAGAGTTCAGGTACCCCAGGTCTGAGGTCCTGATGGGG
ATGGCACGATGCCCAGTGGGCAGGCTCCTCCTGCTCCTCCTCTTCAGAGC
TGGTGTAGCTTGAGCCCATGCTAATCCAACCCCTACAGCCCAGCCTTCTC
TGGCTCAGTTCCAGTCTGCAATTCACTTCTGAGAATGGAACCCAAGCCCA
TTTCTCTCCCACCTGGGCTCCCCCTCTGTATAGCAAACTGCCACTGGTAA
CAGTATCACTAAAAGATTTTGTATTTTCCCCCCCCCCCCCAGGTGCTGAA
TTTGTATAGAGCATTCAGCAGGCCAGGCCAGAGGCTGACGAGGCTTCCCA
CTTTGCTCTTGCTTACTCCCCTTCAGCCCCCAGCCACGGTTGACAGTGAG
CCTCTGTCAAGCCTCATGAAGCTCATTTCCAGCCTAGAATTAGGATTCTA
CTAATCTTCCAGGCAGATGTTTGTAGGAAGTTAGCTGGAGGATTACAGAA
GCCCTGTTTGTGGTGTCGGGGGTTGGGTAGGTCCCCAAATTCTCTTCTAC
CCTTTGGGAGCATCTGGTTCCCTTTTTTTATCCTATATTTTATATTAGGA
ACAAGGAAACTATATCCTAATACCCCCCTTATAATCACTGCTTCTCAAAA
ACTGTACAGGGTTCCTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_a16.b1 MSMg01no265_a16.b1 CHROMAT_FILE:
MSMg01no265_a16.b1 PHD_FILE: MSMg01no265_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:24 2005
         (206 letters)



>mm_chr4_131632139_131632744
          Length = 606

 Score =  352 bits (182), Expect = e-102
 Identities = 200/206 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaataattgcatttgtagtttccatttcagttaaccagtacaacaattctacgtaatgt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 406 tgaataattgcatttgtagtttccatttcagttaaccagcacaacaattctacgtaatgt 347

                                                                       
Query: 61  tggtgcaacgtcgtattttacccccagggaaacaagcttacccacaggctcaatcctgaa 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 346 tggtgcaacatcgtattttacccccagggaaacaagcttacccacaggctcaaacctgaa 287

                                                                       
Query: 121 ttaatgttagcaggctacatccgagtttcttgctttgaccaatagacaacactgccttgg 180
           ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 286 ttaatgtaagcaggctacatccgagtttctagctttgaccaatagacaacactgccctgg 227

                                     
Query: 181 gtagtaggagagaggagttttggttg 206
           ||||||||||||||||||||||||||
Sbjct: 226 gtagtaggagagaggagttttggttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no265_a16.g1 MSMg01no265_a16.g1 CHROMAT_FILE:
MSMg01no265_a16.g1 PHD_FILE: MSMg01no265_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:24 2005
         (290 letters)



>mm_chr4_131479891_131480580
          Length = 690

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtccaatttccagacagaggcggcagcagagggacagagttcaggtaccccaggtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtccaatttccagacagaggcggcagcagagggacagagttcaggtaccccaggtctg 260

                                                                       
Query: 61  aggtcctgatggggatggcacgatgcccagtgggcaggctcctcctgctcctcctcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtcctgatggggatggcacgatgcccagtgggcaggctcctcctgctcctcctcttca 320

                                                                       
Query: 121 gagctggtgtagcttgagcccatgctaatccaacccctacagcccagccttctctggctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagctggtgtagcttgagcccatgctaatccaacccctacagcccagccttctctggctc 380

                                                                       
Query: 181 agttccagtctgcaattcacttctgagaatggaacccaagcccatttctctcccacctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttccagtctgcaattcacttctgagaatggaacccaagcccatttctctcccacctgg 440

                                                             
Query: 241 gctccccctctgtatagcaaactgccactggtaacagtatcactaaaaga 290
           |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gctccccctctgtaaagcaaactgccactggtaacagtatcactaaaaga 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)