BAC Information

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BAC

Clone NameMSMg01-265F22
Chromosome4 (Build37)
Map Location 140,292,862 - 140,472,380
singlet/doubletdoublet
Overlap genePadi6, Padi4, Padi3, Padi1, Padi2
Upstream genePax7, Gm1667, Klhdc7a, Igsf21, LOC100040728, Arhgef10l, Rcc2
Downstream geneSdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265F22.T7 (MSMg01no265_f22.b1)MSMg01-265F22.TJ (MSMg01no265_f22.g1)
ACCAG406650AG406651
length811769
length of high quality
(start - end)
233 (178 - 410)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no265_f22.b1 PHD_FILE: MSMg01no265_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:50 2005CHROMAT_FILE: MSMg01no265_f22.g1 PHD_FILE: MSMg01no265_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,292,862 - 140,293,094)(140,472,097 - 140,472,380)
sequence
TTTTTTTTTTTNTNTNNNNNTNTCTATTAGTTTTTAAATAACTTTTTTNT
TCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCCAACCCTCTATACTGGGCCTCTGCAGGCTCACACAGTGCCCAG
ACAAGCACATAGGCAAGATTCCCCCCCACAAATTTAAGTTTGTTTTATAA
GGGATCCTCCTAGGAGGCGTTATCTTGGGGATGTCATCTCTATAGGGTGT
GCTATCAGCTCAAATGCATTTGTCCTTTCCCAGCTATGAGGCTAGGCATC
ATTCAAATGGACTGGATAAATCATAGCGTGTATAAACCTACTCTCGGGTC
AAGGTGGAAGCCAGATAAGCCTTTGTAACACACAGATCTGGCCCCACAGC
CTGTGATCTGTGACTGAATTTTCCCCCCCCCCCCCTGTTAGAGGAAGTAC
TGGGTCCACCACCTCGCCCGGCATAAAAAAAAAAAAAAGGGCTGGGACTT
ACTCTGAGACCAGTAGACTCTTGTCTTCTTCGCCTCTTCTTCGGAGGTAT
GTAGGATCAACTGGTAATTCTGTAGGATGCTGGTGGGGCCCTCCACAGTT
TACATTCATCTGAGACAGGTTCTGTATTTCTGGGTCAAAGGATGGACAGA
CTCAGGCCAGTCACCATGATGGGATAGGGATGGAAATGGCTTGGAGTACT
GTATGCTACATATATTATAAATGTTTACTCTTAATCTATATATTATATAT
CTACCAATCCTGTTATTTTATTTTACTATAAATACTCTACCACATATTAT
ATCATATAAAG
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGACTACTGAAGGCCATGTCTTGGG
ACTCGTGCATGACTTCCTGCTGAAGGAGAAATGGTTTGGGGATTGTGAGA
ACTCAGCAAGACTCAGGGTAGGGAGGGCATTGGCTGCTCTGGCTGCTAGA
TATGGAAGTCTATGTAGGACAATTTATACCCTGACATTCTAACTCAACAG
GGTGGCCGTCTGGAGACTTTTAGGAGATGGCGAAGGTTGCACGGGGCATC
AGGGGCTCTAATCAACTATGAATGGTGGCCTTTTAAGAAGTGAGAGAGAA
AATAAAGGTTTTTTGTGTAGCACCCGCCCCCCCGACCAGGGGGTGGAGGT
GCCAGGACTGGCACCCCGCCTAAACCAGAGATGACGGTTCCTAAGAACCA
CCGTGGGTCTGGGGGCTCTGGAAGGATTCTTGTGGGATTTGAAATGACTG
CAGTACAGGCCTGAGTATGTATCAGGCAAAGCTGCTGCTGGGGGCGGGGG
CAGCAATCTGAGGTCCAAGAGTCTCAGAAACATTGCACACTTGTTTCAAT
TTTCTAGCTTTCTCTCTCTTTCTCCTCCTCCTCCTCCTCTTTCCCCTTAT
TTTCCTTCTTTGGATTTCCTTTCTCCCCCCCCCTCCTCTTCTTCTTCATC
ATCATCATTTCCATCAACTTCTTTTAATTTTTCTTTTGGAACCCGGGGTC
TTTCAAATGGAGCCTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_f22.b1 MSMg01no265_f22.b1 CHROMAT_FILE:
MSMg01no265_f22.b1 PHD_FILE: MSMg01no265_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:50 2005
         (233 letters)



>mm_chr4_140292662_140293294
          Length = 633

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaatttaagtttgttttataagggatcctcctaggaggcgttatcttggggatgtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaatttaagtttgttttataagggatcctcctaggaggcgttatcttggggatgtcat 260

                                                                       
Query: 61  ctctatagggtgtgctatcagctcaaatgcatttgtcctttcccagctatgaggctaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctatagggtgtgctatcagctcaaatgcatttgtcctttcccagctatgaggctaggc 320

                                                                       
Query: 121 atcattcaaatggactggataaatcatagcgtgtataaacctactctcgggtcaaggtgg 180
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcattcaaatggactggataacccatagcgtgtataaacctactctcgggtcaaggtgg 380

                                                                
Query: 181 aagccagataagcctttgtaacacacagatctggccccacagcctgtgatctg 233
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 aagccagataagcctttgcaacacacagatctggccccacagcctgtgatctg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no265_f22.g1 MSMg01no265_f22.g1 CHROMAT_FILE:
MSMg01no265_f22.g1 PHD_FILE: MSMg01no265_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:50 2005
         (286 letters)



>mm_chr4_140471897_140472582
          Length = 686

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgactactgaaggccatgtcttgggactcgtgcatgacttcctgctgaaggagaaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctgactactgaaggccatgtcttgggactcgtgcatgacttcctgctgaaggagaaatgg 425

                                                                       
Query: 61  tttggggattgtgagaactcagcaagactcagggtagggagggcattggctgctctggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tttggggattgtgagaactcagcaagactcagggtagggagggcattggctgctctggct 365

                                                                       
Query: 121 gctagatatggaagtctatgtaggacaatttataccctgacattctaactcaacagggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gctagatatggaagtctatgtaggacaatttataccctgacattctaactcaacagggtg 305

                                                                       
Query: 181 gccgtctggagacttttaggagatggcgaaggttgcacggggcatcaggggctctaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gccgtctggagacttttaggagatggcgaaggttgcacggggcatcaggggctctaatca 245

                                                       
Query: 241 actatgaatggtggccttttaagaagtgagagagaaaataaagg 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 actatgaatggtggccttttaagaagtgagagagaaaataaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)