BAC Information

Click to search

BAC

Clone NameMSMg01-265H20
Chromosome4 (Build37)
Map Location 118,334,397 - 118,334,679
singlet/doubletsinglet
Overlap genenone
Upstream genePrnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290
Downstream geneOlfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265H20.T7 (MSMg01no265_h20.b1)MSMg01-265H20.TJ (MSMg01no265_h20.g1)
ACCAG406737AG406738
length803754
length of high quality
(start - end)
232 (46 - 277)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no265_h20.b1 PHD_FILE: MSMg01no265_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:59 2005CHROMAT_FILE: MSMg01no265_h20.g1 PHD_FILE: MSMg01no265_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGACAGCCAGGACTACACAGAGAAACTCTGTCTCAAAAAATAA
ACAAAAAACATAAAAACAAAAACAAAAACAAAAAAACAAATAAAATTTAA
TAGTTGTTAAATGTAAAATTTTGTGTCAGAGGTGGGGACACTACTCTGAT
TAAATCTAGCCATGTGGCTTTTAGGCCTTTAGAGCTGGTTTTTTGAAGGA
ATTTGGAAGTGTTTGGGGAAGAAGTCTACAGAAGCCCTAAAATGCTATAA
ACAGAATGTAATGGAAGATTTTGTTGTAATTCAGAAGACAGAATCCTGAA
AGGAGTGTATACTTTATTTTTTGCCCCCCCGCACCTTCAGATGGTAAATG
ATAGTATAAAGGAGCCCCCCCCAAATTAAAAAATAAAAGATCTAAGTCAG
AAAGGTAAGAAAATAAGAATAACATAAAAAAAGAAAGAAAAGAACAGGAA
CAATAAATAAAAATAATAGATAAAGAAACAAGAAAAAAAAAAAAAAAAAT
ACTAATAAAATATATAAGAATAACAAATACAAAAAACAAAATATAAAAAC
ATAAAAAAATAAATAAACATACGATTCATAGTAAGATTACAAAAAAATCA
CAATATAAATAATAAACAATAAATAATAAAATTTTGAAAATACAAAAATA
GATAAAGACATTAATTATAAAAAATAAATAGAAAATATACATAAAAAATA
AAATAAATAAAAAAAACAAAATGAACAAACAAATTATTAAATAGTAAGAA
TAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGAATGAGAGCTGGAGCACGGA
TGTGGATGGGGGTGCCGTTCGCTGAGCTGAGCAGCACAGGACTAGAGTCT
GGATGAGATGCGTTCAGACTAGTTTGGGGGCTTAGGCAGCTTGTGGAATC
GCCAGCCTCCAGTGGATGTCTGTGACTAGAACAGAAGGCACGGCTTAGAG
GCAGAAATCAGTGTTACTGGCACTTTCATAAGAGCTGAAGCAATTGGAGG
TGATAGGGCCGCAGGAAGTGTATGAAGGAAGAGAGCTGAATGCAGAACAC
CAGAAAACCTCTTTTGTTTAAGCTACCCTCCCGGAGAAAACCCAGAGATG
AAGGTGGGATTGGGAGACCATAAAGAATGCCATGTGAGACAGAAACCCAA
GGTGAGACAAAGCCCTCAAGAAGTGAGAGGTCTTTGTGACCCAGTGTGAG
AAGATAGCAGGTGAGACAAGAGGCAGAAACTCTACCTCTTTAGCACCTAG
AAAATTCTGGAAGAGTAGATCCAAAATTATGTTAAGAGAAGCAAGTTCAG
GCTGGCTGTCCAAGACTCTGACACAAGATGGAAGAGAGTCCTATGTAGGG
CATATCCTGTTGAAGGAAATGTAGCTTTTTATGGTGTGAGGATCATGGCT
CATCCAGTGATGGGAACTAGTGATGAAGCCTTTGAAAAGTGCCTCAAAAG
GGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_h20.g1 MSMg01no265_h20.g1 CHROMAT_FILE:
MSMg01no265_h20.g1 PHD_FILE: MSMg01no265_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:59 2005
         (286 letters)



>mm_chr4_118334197_118334882
          Length = 686

 Score =  485 bits (251), Expect = e-141
 Identities = 275/283 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagaatgagagctggagcacggatgtggatgggggtgccgttcgctgagctgagcagca 60
           |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 483 ttagaatgagagctggggcacggatgtggatgggggtgccattcgctgagctgagcagca 424

                                                                       
Query: 61  caggactagagtctggatgagatgcgttcagactagtttgggggcttaggcagcttgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 caggactagagtctggatgagatgcgttcagactagtttgggggcttaggcagcttgtgg 364

                                                                       
Query: 121 aatcgccagcctccagtggatgtctgtgactagaacagaaggcacggcttagaggcagaa 180
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 363 aatcgccagcctccagtggatgtctgtgactagaacagaagacacagcttagaggcagaa 304

                                                                       
Query: 181 atcagtgttactggcactttcataagagctgaagcaattggaggtgatagggccgcagga 240
           ||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 303 atcggtgttactagcactttcataagagctgaagcaattgaaggtgatagggccacagga 244

                                                      
Query: 241 agtgtatgaaggaagagagctgaatgcagaacaccagaaaacc 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agtgtatgaaggaagagagctgaatgcagaacaccagaaaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)