Query= MSMg01no265_i22.b1 MSMg01no265_i22.b1 CHROMAT_FILE:
MSMg01no265_i22.b1 PHD_FILE: MSMg01no265_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:05 2005
(320 letters)
>mm_chr4_54956344_54957063
Length = 720
Score = 571 bits (295), Expect = e-167
Identities = 315/333 (94%), Gaps = 18/333 (5%)
Strand = Plus / Plus
Query: 5 gaattctggaaaaaatatgtgtgtgtatatatatatatat------------------gc 46
|||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 187 gaattctggaaaaaatatgtgtgtgtatatatatatatatatatatatatatatatatgc 246
Query: 47 atcattattcaaatgatgaaattagaatagcttcaattatttctgttgaaattcttttta 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atcattattcaaatgatgaaattagaatagcttcaattatttctgttgaaattcttttta 306
Query: 107 atatagactgtggcccaacagtttttgtttaagtctctcctatagaattaatagaagccc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atatagactgtggcccaacagtttttgtttaagtctctcctatagaattaatagaagccc 366
Query: 167 ctttccctcgataaacacttttctttaagaaattgggtgtcttctttttatttgaaaagg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctttccctcgataaacacttttctttaagaaattgggtgtcttctttttatttgaaaagg 426
Query: 227 ccttattaagcaaaatgatttatagactatccccatcctcctagtgtcaggcaagtatga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ccttattaagcaaaatgatttatagactatccccatcctcctagtgtcaggcaagtatga 486
Query: 287 aggtcctagttgctcaggtcaccccggttacag 319
|||||||||||||||||||||||||||||||||
Sbjct: 487 aggtcctagttgctcaggtcaccccggttacag 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no265_i22.g1 MSMg01no265_i22.g1 CHROMAT_FILE:
MSMg01no265_i22.g1 PHD_FILE: MSMg01no265_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:05 2005
(287 letters)
>mm_chr4_55099398_55100084
Length = 687
Score = 555 bits (287), Expect = e-162
Identities = 287/287 (100%)
Strand = Plus / Minus
Query: 1 caaggcaggtgagactacatattaagcctctgtctcaatgacatagtgacaactgagcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 caaggcaggtgagactacatattaagcctctgtctcaatgacatagtgacaactgagcac 428
Query: 61 tttgccattccagttaaaactaggcttcaatgatcaatggaaaatgatgagggctagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tttgccattccagttaaaactaggcttcaatgatcaatggaaaatgatgagggctagata 368
Query: 121 tcccggagtaatttgacaaatacattctttcataagcctaaatctgtcaataccttggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcccggagtaatttgacaaatacattctttcataagcctaaatctgtcaataccttggtt 308
Query: 181 aaacttcctaactaggtttatagttcctatcggcatctctatttctttgtattaaagatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aaacttcctaactaggtttatagttcctatcggcatctctatttctttgtattaaagatc 248
Query: 241 cctggcatgttattcaatgctctaatgagttcattcgctggccaata 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cctggcatgttattcaatgctctaatgagttcattcgctggccaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
