BAC Information

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BAC

Clone NameMSMg01-266A08
Chromosome4 (Build37)
Map Location 17,728,604 - 17,728,897
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266A08.T7 (MSMg01no266_a08.b1)MSMg01-266A08.TJ (MSMg01no266_a08.g1)
ACCAG407122AG407123
length733738
length of high quality
(start - end)
321 (45 - 365)294 (78 - 371)
definitionCHROMAT_FILE: MSMg01no266_a08.b1 PHD_FILE: MSMg01no266_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:42 2005CHROMAT_FILE: MSMg01no266_a08.g1 PHD_FILE: MSMg01no266_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCAAATGGTTGAGAAGCACCTGAAAAAATGTT
CACCATCCTGAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCATTCAGAATGGATAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGAATGTGGAGAAAGAGGAACATTCCTCCATTGTTGGTGGA
ATTGCAAGCATGTACAAATACTCTGGAAATCAGTCTGGTGGTTCCTCAGA
AACTTGGACATAGTACTACCGAAGGATCCCGCAATACCTCTCCTGGGCAT
ATATCCAAAATATGTTTTTACCGCCCACCACCCACACATGGTCAATTATA
TTCAGAGCAGCCTTATTTGCAACAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGCATACAGAAAATGTGGTACATTTACACAAGGG
AGTACTACTCAGCTATTAAAATGAATGAATTTATGAAATTTCTAGGCAAA
TGGATGGGCCTGATGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAA
GAACTCACATGATATAGACTCACTGATATAGACTCACTGATAAGTGGATA
TTATACCAGAAACGTACTATACCCCAGATACAAGATACAGTTTGCAAAAC
ACATGAAACTCATGAAGAAAGAAAAGTGTGGAN
CGAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAATTCTCAAACTCTTTCCTGGA
GACATGGCTCCAGGAAAAATGAGAATGATAACAGGCTAAACAATATATAC
ATTAAATATGTAAAAATTATAATTACATAATATAGTGTTTAATATAATTG
TAGGTAAACAATATATTTTAGGATTTGTGGTATATGTAGATTAAGATGCA
TGACAAAACAACAAATACAAAGGAAGGAGAAATTAAAAGTGTAAGATTGG
GGGACAGAGAGAAGCCTGTACAGTTAAGAACATTGACTAACCTCTAAGAG
GAGCTCATTTCAAGCCCCATTATCGCATCACCACCTACACAGCAATCTGT
AAATCCAGTTTCAGGGGATCTGATGCCTTCTTCTGTTCATGGCGGAAACC
AGACACACATGTGGTGCACAAAAATCCATAAAGGCTTTGGCATCTGTAAC
ACACAGTGAGTATTTGGAGGTAGACTATGAAGAGTTAAATGGACCAATAG
TTGTGATAAATGTGTTCAATAAAGAATCTCCAATTTATTTAATACATGAA
AACAGAATATTTGAAAAGGAGTAAATAATAGATGATTCTATATGAAATAT
AGAATCTCTAGAGTCATTTCTTCAAGTGCAAAGACAAATATATAAAAACA
TATCAATCACTGATTAATACCATTAGTCATTAATAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_a08.g1 MSMg01no266_a08.g1 CHROMAT_FILE:
MSMg01no266_a08.g1 PHD_FILE: MSMg01no266_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:42 2005
         (294 letters)



>mm_chr4_17728404_17729099
          Length = 696

 Score =  534 bits (276), Expect = e-156
 Identities = 289/294 (98%), Gaps = 2/294 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattctcaaactctttcctggagacatggctccaggaaaaatgagaatgataacaggct 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattctcaaattctttcctggagacatggctccaggaaaaatgagaatgataacaggct 260

                                                                       
Query: 61  aaacaatatatacattaaatatgtaaaaattataattacataatatagtgtttaatataa 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 aaacaatatatacattaaatatgtaaaaagtataattacataatatagtgtttaatataa 320

                                                                       
Query: 121 ttgtaggtaaaca--atatattttaggatttgtggtatatgtagattaagatgcatgaca 178
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtaggtaaacataatatattttaggatttgtggtatatgtagattaagatgcatgaca 380

                                                                       
Query: 179 aaacaacaaatacaaaggaaggagaaattaaaagtgtaagattgggggacagagagaagc 238
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 aaacaacaaatacaaaggaaggagaaattaaaaatgtaagattgggggacagagagaagc 440

                                                                 
Query: 239 ctgtacagttaagaacattgactaacctctaagaggagctcatttcaagcccca 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtacagttaagaacattgactaacctctaagaggagctcatttcaagcccca 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 696
Length adjustment: 9
Effective length of query: 285
Effective length of database: 687
Effective search space:   195795
Effective search space used:   195795
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)