BAC Information

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BAC

Clone NameMSMg01-266C13
Chromosome4 (Build37)
Map Location 146,694,568 - 146,695,205
singlet/doubletsinglet
Overlap geneLOC666581
Upstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
Downstream geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266C13.T7 (MSMg01no266_c13.b1)MSMg01-266C13.TJ (MSMg01no266_c13.g1)
ACCAG407222AG407223
length757750
length of high quality
(start - end)
615 (129 - 743)202 (458 - 659)
definitionCHROMAT_FILE: MSMg01no266_c13.b1 PHD_FILE: MSMg01no266_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:52 2005CHROMAT_FILE: MSMg01no266_c13.g1 PHD_FILE: MSMg01no266_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:52 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAACTAATTACACCCCAATGGCTGAAAACCAACTTAAAGAAATG
TTCAAAGTCCTTAGTGATATTACAACTGCAAATCACAATGACACCTTACA
GCAAACAGAATAGCTAAGATCAAAACCTCAGGTGACAACACATGTTGGAG
AGGATGCGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAAC
CTCTACAACCACTCTGGAAATCAATGTGGAGTTTCCTCAGAAAATTGGAA
ATAAATAGATCTGAAGTCCCCGCAATACCATTCTTGGGAATATACCCAAT
ATCTCCAAAGACACATACTAATAAATAAGTATAATAAAAAACAAAACAAA
ACAAAAACAAGGGTGTTTCTCTTAAAAAAAAAAAAAAAGGCAATCTCTTA
AGAAAGACATTATACTATAAAATCTTCAGGGATGTAAAACTAACTAAACC
CCAGGCTCATGAAACTAAATAGATATTAGTAAACTTTGATCTTACCCCTC
TTTAGCAGGCTTTTAGCAGTTTCAGTCTTCAGTTCTGTAAAACTAGGACT
TCCCTAAATATGTGTGTGTGTGTGTGTATATGGGATCTCTTGGAGTTAAG
AGTTACAGGTAGTTGTGAGTCACCTGACACAGGTGCTTATAAACAAATTT
AGGTCTTCTGCAAGAATACCGAATGTTCCTAAGAACCTACAGCAAAGTTG
TGGGCTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGATAAGGNN
GAACNATAGAAGGATTCCCGAAAATATCAGAGAANTCATACAGGAGAGAA
ACCTTACAAATGTAATGAATGTGACCCATGCTTTACCTGAAAATCACATC
TTAGTATTCATCAGATAATTCATACAGAAGAGAAACCTTACAAATGTAGT
GAATGTGACAAATCCTTTACTGAAAATGGCTGTCTGAGAATTCATCAGAG
AATTCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCT
TTACTAAAAAATCCAGTTTGAGGTTTTTTTTGAGATTTCATACAGGAGAG
AAACCTTACAAATTTANGTAATGTCANAAACGNNNCCCTCAAAAATGCAG
NCTGAAAANTCATCAGAAGAACCACACAAAAGNGAAACAAAACNGGTGTG
GGGAATGTGACAAAGCTTTACTGAGAAAGTCAATCTGAGAAGGCATCAGA
GAACTCATACAGGGGAGAATTCTTACAAATGTATTGAATGTGACAAATGT
TTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACATTANA
GAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAACTTA
GTCTGAGAATGCATTTTATAATTCATACAGTAGAGAAAACTTACAAAAAT
GCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAATTAAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_c13.b1 MSMg01no266_c13.b1 CHROMAT_FILE:
MSMg01no266_c13.b1 PHD_FILE: MSMg01no266_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:52 2005
         (615 letters)



>mm_chr4_146694213_146695227
          Length = 1015

 Score = 1044 bits (540), Expect = 0.0
 Identities = 602/646 (93%), Gaps = 39/646 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatcacaatgacaccttacagcaaacagaatagctaagatcaaaacctcaggtgacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 caaatcacaatgacaccttacagcaaacagaatagctaagatcaaaacctcaggtgacaa 934

                                                                       
Query: 61  cacatgttggagaggatgcggagaaagaggaacactcctccattgctggtgggattgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 cacatgttggagaggatgcggagaaagaggaacactcctccattgctggtgggattgcaa 874

                                                                       
Query: 121 acctctacaaccactctggaaatcaatgtggagtttcctcagaaaattggaaataaatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 acctctacaaccactctggaaatcaatgtggagtttcctcagaaaattggaaataaatag 814

                                                                       
Query: 181 atctgaagtccccgcaataccattcttgggaatatacccaatatctccaaagacacatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 atctgaagtccccgcaataccattcttgggaatatacccaatatctccaaagacacatac 754

                                                                       
Query: 241 taataaataagtataataa-aaaacaaaacaaaacaaaaacaagggtgtttctcttaaaa 299
            ||||||||||||||| || |||||||||||||||||||||||||||||||||||     
Sbjct: 753 aaataaataagtataa-aacaaaacaaaacaaaacaaaaacaagggtgtttctct----- 700

                                                                       
Query: 300 aaaaaaaaaaaggcaatctcttaagaaagacattatactataaaatcttcagggatgtaa 359
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 --aaaaaaaaaggcaatctcttaagaaagacattatactataaaatcttcagggatgtaa 642

                                                                       
Query: 360 aactaactaaaccccaggctcatgaaactaaatagatattagtaaactttgatcttaccc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aactaactaaaccccaggctcatgaaactaaatagatattagtaaactttgatcttaccc 582

                                                                       
Query: 420 ctctttagcaggcttttagcagtttcagtcttcagttctgtaaaactaggacttccctaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctctttagcaggcttttagcagtttcagtcttcagttctgtaaaactaggacttccctaa 522

                                                                       
Query: 480 atat------------------------------gtgtgtgtgtgtgtgtatatgggatc 509
           ||||                              |||||||||||||||| |||||||||
Sbjct: 521 atatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgggatc 462

                                                                       
Query: 510 tcttggagttaagagttacaggtagttgtgagtcacctgacacaggtgcttataaacaaa 569
           ||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||
Sbjct: 461 tcttggagttaagagttacgggtagttttgagtcacctgacataggtgcttataaacaaa 402

                                                         
Query: 570 tttaggtcttctgcaagaataccgaatgttcctaagaacctacagc 615
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tttaggtcttctgcaagaataccgaatgttcctaagaacctacagc 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)