BAC Information

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BAC

Clone NameMSMg01-266H03
Chromosome4 (Build37)
Map Location 146,902,338 - 146,902,648
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718
Downstream geneOTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266H03.T7 (MSMg01no266_h03.b1)MSMg01-266H03.TJ (MSMg01no266_h03.g1)
ACCAG407432AG407433
length730737
length of high quality
(start - end)
315 (45 - 359)279 (77 - 355)
definitionCHROMAT_FILE: MSMg01no266_h03.b1 PHD_FILE: MSMg01no266_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:14 2005CHROMAT_FILE: MSMg01no266_h03.g1 PHD_FILE: MSMg01no266_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAGATACTCTTCATTTCACGGTGCAGATAGTTTGTGCATATTCA
CATGTCATGTTTCCATTGTTCTGTTTTCCATGTAAAAAAATGTCTTCTTA
TTCTTCATGTGTATCTTTTTGATTGAAGTCATTTATTCACATGATATCAC
TGCAGCCCTTCCTCTCTTCCTAGTAACCCCTCACATAAATCTCCCCTCAC
TCCGCTTCGAAGCAGAAGTATTCATCTGTCGGATGTAGAGGTAGTGCAGT
TCTTTTCCTAGTCTATAGGGATCCTGAAGATGGTGACTTTTGACTTACAG
AAGCACTTATTTTTTATGACTCCCCCTCCATTAATTCTTGACTTTATCAT
CAGAGACACTGGCGCCCTGTTTAGAAAGTTGTTTCCTGATCTAACAAGTT
CAAAGCTACTCTCCACTTTTTGTTCCATTAGATTAAGTATGTCTGGATTT
ATATTGAGGTCTTTGCTTCACTTGGACTTGAGTATTATGCAGGGTGTTAA
ATATGGATCTATATGCTTTTTTCTACCTGATGACATCCAGTTAGACCAGC
ATCATTCATAAAGATGTTCTCTCCTTTCCGTTGTATAGTTTTAGCTTCTT
TGCCAAAATTTAAGTGTCTGTAGGTGTGTGGGTCTATGTTTGTGTCTCCT
ATTGAATTCCATTAATCCACCTACTTCTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACAGGAGAGAAACCTTACAAAT
GCAGTGAATGTGACAAATGCTTTACCCAACAATCCAATCTTAGTATTCAT
CAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGGCAA
ATGCTTTACTGAAAAAAGCAGTCTGAGAATTCATCAGAGAATTCATACAG
GAGAGAAACCTTACAAATGCAGTGAATGTGGCAAATGCTTTACTGAAAAA
AAGCAGTCTGAGAATTCATCATATATTTTTTACAGGAGAGAAACCTTACA
AAGGCAAGGAATTTGGTTAACGCTTTANCCAAAAACCAGTCTGAGAATTC
ATCAGAGAATTCATACAGCACAGAAACATTAAAAAAGAAATGAATGTGGC
GAATGCTTTACTGTAAAAAGCAGTCTGAGAATTCATCAGAAAATTCATAC
AGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACCAAAC
CATCCCATCTTAGTATTCATCAGAGAATTCATACAGGAGAGAAACCTTAC
AAATGCAGTGAATGTGAAAAATGCTTTAATAAAAAAAACATTTCTGAAAA
TTCATCAGAGAATTCCTACCGGAGAGAGACCTTACAAATGCAGTGAATGT
GACAAATGCTTTTTCCGAATATTCCATCTTGGTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_h03.b1 MSMg01no266_h03.b1 CHROMAT_FILE:
MSMg01no266_h03.b1 PHD_FILE: MSMg01no266_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:14 2005
         (315 letters)



>mm_chr4_146902134_146902848
          Length = 715

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttagatactcttcatttcacggtgcagatagtttgtgcatattcacatgtcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttagatactcttcatttcacggtgcagatagtttgtgcatattcacatgtcat 264

                                                                       
Query: 65  gtttccattgttctgttttccatgtaaaaaaatgtcttcttattcttcatgtgtatcttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtttccattgttctgttttccatgtaaaaaaatgtcttcttattcttcatgtgtatcttt 324

                                                                       
Query: 125 ttgattgaagtcatttattcacatgatatcactgcagcccttcctctcttcctagtaacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgattgaagtcatttattcacatgatatcactgcagcccttcctctcttcctagtaacc 384

                                                                       
Query: 185 cctcacataaatctcccctcactccgcttcgaagcagaagtattcatctgtcggatgtag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctcacataaatctcccctcactccgcttcgaagcagaagtattcatctgtcggatgtag 444

                                                                       
Query: 245 aggtagtgcagttcttttcctagtctatagggatcctgaagatggtgacttttgacttac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggtagtgcagttcttttcctagtctatagggatcctgaagatggtgacttttgacttac 504

                      
Query: 305 agaagcactta 315
           |||||||||||
Sbjct: 505 agaagcactta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)