BAC Information

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BAC

Clone NameMSMg01-266I03
Chromosome4 (Build37)
Map Location 34,729,081 - 34,729,367
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik
Downstream geneZfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266I03.T7 (MSMg01no266_i03.b1)MSMg01-266I03.TJ (MSMg01no266_i03.g1)
ACCAG407478AG407479
length988743
length of high quality
(start - end)
---289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no266_i03.b1 PHD_FILE: MSMg01no266_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:19 2005CHROMAT_FILE: MSMg01no266_i03.g1 PHD_FILE: MSMg01no266_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCGAGGACGANNNNNNNNNNNNNAGNNNNTNNNAGAAGGGGGGGGAGG
GGGAGTACGCNGGCAGGGCGGTNGGAGGGGTANAGAGGGGGATGGGGAGG
GGCGGGCGGAAAAAAAATTGGGGGGGCCGGGGGGAAAAAGGGAAAACACA
CCTAAATTGTGGGCGGGAGGGGGGGGCCCGGCCGGGGGNAAATAAANNNN
CNCAAANCGGGGTGTTTTCTCCAAAAAAAAAAGGTTTGGGGGGGGGGGGG
GTTTCCCTGGGGGCGAACAAAAAGGGGGGGGAAAAAACTCCGGTGGTGGG
TGGGGGCGGGAGGAAGGGGGGGGGGGGGGCCCCCCCTCCCCCCCAACACA
AAAGGGGGGGGGGGGGACGCGCGCGGGCGCGCTAAAGATAGGGAGGGGGG
TGGAGGCGGCGCCGACAGGGGAGGGGGGGGGGGGAGAAAGGGGGGGGGGT
TTAAAGAAAGAAGGGGGGGGGCGAGCGGGGGGGGGGGAATCGGGCGCGCC
GGCTGTGGGGTGGGGGCGGGGGGGTATAGACACGCGGGTATGTCCCACAC
GCGGATGCCACGCGCGCAAACAATGAAAAGGACGAGCTGCGGGGGCCCCG
GGGGGGCGTGAAGGAAGGAGGAGAGGCGAGTGGGGGGGGGGGGGGGAGGG
GGCGGGCCAGGTAAATGTTCACCTGTGGGGTGGGGGAGGGAGGGGCGCGG
GGGGGGTGCGCTAGTCGCGGGGGTCGAGGACAAGCGGGATGGGAGGGGCG
GGTGTGGGTGCGGGGTGGGGGGGGGAACGCGCGGGGATGGGAGGCAGCGG
CCGCGACGCAGAGTCCCGGAGGGGGGGAGGCGGGGGACGAGGTGAGGGTG
GATGCGCGGGGGCGGGGGGGAGCCGGGCGGCGGCGGATACGGGGAGGTGG
GAGGGCGGGAGGGAGGGGTTTGNAAGCGGGGCAGGGGAACGCGTGAGGTG
TAGCCGGCGGTCCGCGGGAGGGCGTGTTCGCTGGTCAN
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATCTCCATGGATGAGGTACAGAG
CGGTCCTTGTTGCTTGAGGGGTAGTGCTAAAAGATTTGTCAGTCTAAAAT
GAAACCAAACTGAGCCTCTTCCAGAGGGCATAGCTCTCTGGGGTTCTGTT
TGATTGTGAGGTATTACCTCTCTGGATTGTAATCTCTTCACTGTGAATTT
TTAGCAACTGCTGTTACTAACAAGAAAAGCACATAGCTTATCACCAGGTT
ATTTTATTGAACTCCGCACTTTCACAGCTTGGCTGTGAGTAAAAACATTT
ACTCTATAAATAGTCTTGCTTTTATCACCCCCCGCCTCAGTCCAACATCC
ATGTTACTTAAGGGAAGCGCCCCAGTTTTCAAAAGAAAGGAGGAAGAGGA
GAAGAGGTGGGGGAGATGGGGTGCAGAAGATCAAGGGCGAAGGTGATGTG
TTTGAACTTGAAACTTTCCAGAGGGTTTGTGGTTGGTGCCGTTTGTTTGC
TCCCATCTCTCTTTCTGATTCCTCTCCTTTTTCTTAAGCTTTTTTTCCCC
TCGCCCTTTTTTTTTTTTCTCAACTTTTATTCCCACCCCCTCATACTACA
CTCTATTCCATCGGCCCCCCTCTTCTTTCTTTTCTTCTTTTGTTTTCACC
ACCTCTTACTTTTTCTTCCCACCCCCCTTTCCTTTTTTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_i03.g1 MSMg01no266_i03.g1 CHROMAT_FILE:
MSMg01no266_i03.g1 PHD_FILE: MSMg01no266_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:19 2005
         (289 letters)



>mm_chr4_34728881_34729569
          Length = 689

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatctccatggatgaggtacagagcggtccttgttgcttgaggggtagtgctaaaagatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 487 aatctccatggatgaggtacagagcggtccttgttgcttgaggggtagtggtaaaagatt 428

                                                                       
Query: 61  tgtcagtctaaaatgaaaccaaactgagcctcttccagagggcatagctctctggggttc 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 427 tgtcagtctaaaatgaaaccaaactgagcctcttccagagggcacagctctctggggttc 368

                                                                       
Query: 121 tgtttgattgtgaggtattacctctctggattgtaatctcttcactgtgaatttttagca 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 367 tgtttgattgtgaggtattacctctctcgattgtaatctcttcactgtgaatttttagca 308

                                                                       
Query: 181 actgctgttactaacaagaaaagcacatagcttatcaccaggttattttattgaactccg 240
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 307 actgctgttactaacaagaaaagcacattgcttatcaccaggttattttatttaactccg 248

                                                          
Query: 241 cactttcacagcttggctgtgagtaaaaacatttactctataaatag 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cactttcacagcttggctgtgagtaaaaacatttactctataaatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)