BAC Information

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BAC

Clone NameMSMg01-266K11
Chromosome4 (Build37)
Map Location 96,873,911 - 96,874,212
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia, LOC100039459, LOC669426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266K11.T7 (MSMg01no266_k11.b1)MSMg01-266K11.TJ (MSMg01no266_k11.g1)
ACCAG407580AG407581
length734738
length of high quality
(start - end)
318 (45 - 362)302 (437 - 738)
definitionCHROMAT_FILE: MSMg01no266_k11.b1 PHD_FILE: MSMg01no266_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:29 2005CHROMAT_FILE: MSMg01no266_k11.g1 PHD_FILE: MSMg01no266_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTACATGCCGATATTCAGTTAGATCAGCACTGTTTGTTGAAGAT
GCTTTCTTTTATAGTTTTGGCTCTCTTTGTCAAAACTCAAATGTCTGTAG
GTATGTGAATCTACTTCTGATTCTTTGCTGCAATTCTATGGATAAACTGT
CTGATTTTATGCCAATATGATGTTTTTATTTCTATTGCTCTACAGTACAG
CTTGAAATCAGGTATAGTGATATCTCTGGAAGTTCTTTTATTGTACAGGA
TTGTTTTATCTATCTTGGATTTTTTGTTTGTTTTTTTCATATAAAGTTAA
GTATTCGTGCTTTTTTGTTTGTACAACATTGTGCTCCAATTTTAATGGGG
ATTACATTGAATCTGCACATTGCTTTTGGTAGGGTAGCCATTTTACTATG
TTAAGGCATACTAACCCTAAACATGGAAGATCTATCTTCTGATATATTCA
ATTTCTTTCTTTAAAGATTTGAAGTTCTTGTCATATAGGTCTTTCCCTTT
CTTGGTTAGAATTATACCAAGGTATTTGTATTACTTGTGGCTATTGTGAG
TGGTGTTGTTTCCATAATTTCTTTCTCAGCCAATTTATCATTTATATACA
GGAGGACTACTGATTTTATTTATTTATTTAGCTAGTTAATGTTGTATCCA
GCTACCTTGTCACAGATGTTTATCTTCTGTAGGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGATGACACTTTTAGAGATAAT
AAGATAGAGACTGCAGCTCTTAGGCCTTTTATTTTCTGAAAATGATTGCA
GTTCCCCTGAATCTAACACAGTTATTAAAATGACAACCCAAAATGGTCTA
CTTTATAAAATGCATATGCCCCAGATCATCATTATCAGGACAAGTGAATT
TTCCATTTCTCTTACTTAGGACTTTGCCATAACCAGAAAAGCTAATAGAA
AGTGGCTATGGTGGGACTGCTTTTAGCCACACCATGCATACTGCCCTTGG
AATGCTTACATTTTCTCNTTGACAACACCCCTTCTCTGAGTCACAATAAC
AGGTGCCTCTAATTTCAGTAGTTGATGCCTCTTGCTTTGGGTGTTACATG
GTCTCTAGGTAGCAAGACATAGTCTGATTTCCTCTTGGTATTTGTTCAGG
CTCCCAGGGACAAAGGAGGAACTTGTAAATCCAGGAAAAACAGAAATCGT
TACCTAATAAAACACCAACAGACTTTCCAGGCCTCAGGGAGTGTAGCACT
GCTGCCCTTTCTAATTCATAGACCACATTCCAAGTGCAAAATGGAATCAT
TTTTTGTTTTCAAAGTGATGCTAATTTATTATCCATGGTGCAAATGTTGA
CTGTGGAAATGAGACTTCAAAAAGAATGTCTGTAGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_k11.g1 MSMg01no266_k11.g1 CHROMAT_FILE:
MSMg01no266_k11.g1 PHD_FILE: MSMg01no266_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:29 2005
         (302 letters)



>mm_chr4_96873711_96874412
          Length = 702

 Score =  584 bits (302), Expect = e-171
 Identities = 302/302 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggtgttacatggtctctaggtagcaagacatagtctgatttcctcttggtatttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggtgttacatggtctctaggtagcaagacatagtctgatttcctcttggtatttgtt 260

                                                                       
Query: 61  caggctcccagggacaaaggaggaacttgtaaatccaggaaaaacagaaatcgttaccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggctcccagggacaaaggaggaacttgtaaatccaggaaaaacagaaatcgttaccta 320

                                                                       
Query: 121 ataaaacaccaacagactttccaggcctcagggagtgtagcactgctgccctttctaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaaacaccaacagactttccaggcctcagggagtgtagcactgctgccctttctaatt 380

                                                                       
Query: 181 catagaccacattccaagtgcaaaatggaatcattttttgttttcaaagtgatgctaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catagaccacattccaagtgcaaaatggaatcattttttgttttcaaagtgatgctaatt 440

                                                                       
Query: 241 tattatccatggtgcaaatgttgactgtggaaatgagacttcaaaaagaatgtctgtagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattatccatggtgcaaatgttgactgtggaaatgagacttcaaaaagaatgtctgtagc 500

             
Query: 301 cc 302
           ||
Sbjct: 501 cc 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)