BAC Information

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BAC

Clone NameMSMg01-267G19
Chromosome4 (Build37)
Map Location 12,197,070 - 12,197,405
singlet/doubletsinglet
Overlap genenone
Upstream geneDpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267G19.T7 (MSMg01no267_g19.b1)MSMg01-267G19.TJ (MSMg01no267_g19.g1)
ACCAG408149AG408150
length760718
length of high quality
(start - end)		334 (46 - 379)607 (77 - 683)
definitionCHROMAT_FILE: MSMg01no267_g19.b1 PHD_FILE: MSMg01no267_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:29 2005CHROMAT_FILE: MSMg01no267_g19.g1 PHD_FILE: MSMg01no267_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGCCACTTTAAACAAAATTTCTAGTCTATTAAAAATTTATCAGC
AAGGCATAGTAGCCGACACTTATAATGTGAGCACTTGGGAGCCTAAGGCA
GGGTGACCAGGAGTTCAAGGTTCTCCTCAGCTACATAACAAGTTTGATAG
CAATCTGAGCCAGAAGATATCTTGTTTCAACACTTTCTCTCCAATAAAAA
AACACTGTCTTGACTTTTTACATCTAATCATTTACTAAATGTAATAGATT
TTTCTCCTTTAAGCCTTTCTTCTCATTCCAATTTTTCAGTCCAGATCCTG
GTAAGTCCTTTGATGCTACCTTCCTTGATATATTCCGGTTTTTAAAGTGG
AATTAATAGGATAAATCTATATTAAAAGGCAGTTATGATATTGACCTGCA
CAATATAACCTGAGCAGTCTCATGATACCCATCTCACTCTGGAGAGGCTG
AGAACCTGGTGCCTGTTCCATCAGGTTGGATGTCTCAGAAGTCTTGCCTA
GTCTGGCATTGAATGATGGGGACCCTGTGGGGGAGTCATGGCAGAAAGGG
AATTGATTTCAAAAACTGAGTTTGGATTGGTTCATCAGTCTGGATCAAGA
CTTCGGGGAGTCTGATGCCAGATAGTTTACTACTAGCATATTTAGACCTG
GCGTAATTTTGAAAAAAGTTTCTTGCTATAATATAGTATGTGGTGCACAA
AAATGCATAA

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTT
TTAATGGGGTTATTTACTACCCCATTTGGGGATCCATCCCATAATCAGCC
ACCAAAATCAGACATTATTGCATAATAATGCCAGAAAGATTTTGCTGAAG
GGACCCTGTCATAGCTGTCTCGTATGCCAGTGTCTGGCAAATACAGAAGT
GGATGCTCACAGTCATCTATAAGACGGAACACAGGGTCCCCAATAGAGAA
GCTAGAGAAAGCACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGG
AACAACAATATGAACTAACCAGTACCCCCCAGAGCGTATATCTCTAGCTG
CATATGGAGCAGAAGATGGCCTAGTCGGTCATCACTGGGAAGAGAGGCCC
CTTAGTATTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCA
AGAAGCGGCAGTGGGTGGGTAAGGGAGCAGGGCAGAGGGAGGGTATAGGG
AACTTTCAGGATAGCATTTGANATGTATATAAAGAAAATATCTAATTAAA
AAAAAAGTTAAAGGACTCACTTAAAATAATGCTGGCTAGTATTCAAACTC
AGCTCTCTACAACTCTGAATTCCATAAGTGAAAGAAATCACATGAAGAAC
ATAGTAGATATGTCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_g19.b1 MSMg01no267_g19.b1 CHROMAT_FILE:
MSMg01no267_g19.b1 PHD_FILE: MSMg01no267_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:29 2005
         (334 letters)



>mm_chr4_12196872_12197605
          Length = 734

 Score =  623 bits (322), Expect = 0.0
 Identities = 330/336 (98%), Gaps = 6/336 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagccactttaaacaaaatttctagtctattaaaaatttatcagcaaggcatag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattctagccactttaaacaaaatttctagtctattaaaaatttatcagcaaggcatag 258

                                                                       
Query: 65  tagccgacacttata------atgtgagcacttgggagcctaaggcagggtgaccaggag 118
           |||||||||||||||      |||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tagccgacacttatacttataatgtgagcacttgggagcctaaggcagggtgaccaggag 318

                                                                       
Query: 119 ttcaaggttctcctcagctacataacaagtttgatagcaatctgagccagaagatatctt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttcaaggttctcctcagctacataacaagtttgatagcaatctgagccagaagatatctt 378

                                                                       
Query: 179 gtttcaacactttctctccaataaaaaaacactgtcttgactttttacatctaatcattt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtttcaacactttctctccaataaaaaaacactgtcttgactttttacatctaatcattt 438

                                                                       
Query: 239 actaaatgtaatagatttttctcctttaagcctttcttctcattccaatttttcagtcca 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 actaaatgtaatagatttttctcctttaagcctttcttctcattccaatttttcagtcca 498

                                               
Query: 299 gatcctggtaagtcctttgatgctaccttccttgat 334
           ||||||||||||||||||||||||||||||||||||
Sbjct: 499 gatcctggtaagtcctttgatgctaccttccttgat 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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